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TET3-overexpressing macrophages promote endometriosis.
Lv, Haining; Liu, Beibei; Dai, Yangyang; Li, Feng; Bellone, Stefania; Zhou, Yuping; Mamillapalli, Ramanaiah; Zhao, Dejian; Venkatachalapathy, Muthukumaran; Hu, Yali; Carmichael, Gordon G; Li, Da; Taylor, Hugh S; Huang, Yingqun The Journal of clinical investigation 2024 Aug;
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TET3 epigenetically controls feeding and stress response behaviors via AGRP neurons.
Xie, Di; Stutz, Bernardo; Li, Feng; Chen, Fan; Lv, Haining; Sestan-Pesa, Matija; Catarino, Jonatas; Gu, Jianlei; Zhao, Hongyu; Stoddard, Christopher E; Carmichael, Gordon G; Shanabrough, Marya; Taylor, Hugh S; Liu, Zhong-Wu; Gao, Xiao-Bing; Horvath, Tamas L; Huang, Yingqun The Journal of clinical investigation 2022 Oct;132(19):
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Transcriptome-Wide Identification of 2'-O-Methylation Sites with RibOxi-Seq.
Zhu, Yinzhou; Holley, Christopher L; Carmichael, Gordon G Methods in molecular biology (Clifton, N.J.) 2022 Jan;2404393-407
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Distinct Processing of lncRNAs Contributes to Non-conserved Functions in Stem Cells.
Guo, Chun-Jie; Ma, Xu-Kai; Xing, Yu-Hang; Zheng, Chuan-Chuan; Xu, Yi-Feng; Shan, Lin; Zhang, Jun; Wang, Shaohua; Wang, Yangming; Carmichael, Gordon G; Yang, Li; Chen, Ling-Ling Cell 2020 Apr;181(3):621-636.e22
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The large repertoire of 2'-O-methylation guided by C/D snoRNAs on Trypanosoma brucei rRNA.
Rajan, K Shanmugha; Zhu, Yinzhou; Adler, Katerina; Doniger, Tirza; Cohen-Chalamish, Smadar; Srivastava, Ankita; Shalev-Benami, Moran; Matzov, Donna; Unger, Ron; Tschudi, Christian; Günzl, Arthur; Carmichael, Gordon G; Michaeli, Shulamit RNA Biology 2020 Apr;171018-1039
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Hepatic TET3 contributes to type-2 diabetes by inducing the HNF4α fetal isoform.
Cao, Tiefeng; Sun, Xiaoli; Jin, Sungho; Huang, Xinmei; Yang, Xiaoyong; Carmichael, Gordon G; Taylor, Hugh S; Diano, Sabrina; Huang, Yingqun Nature communications 2020 Jan;11(1):342
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CIRCexplorer3: A CLEAR Pipeline for Direct Comparison of Circular and Linear RNA Expression.
Ma, Xu-Kai; Wang, Meng-Ran; Liu, Chu-Xiao; Dong, Rui; Carmichael, Gordon G; Chen, Ling-Ling; Yang, Li Genomics, proteomics & bioinformatics 2020 Jan;
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Dynamic Imaging of RNA in Living Cells by CRISPR-Cas13 Systems.
Yang, Liang-Zhong; Wang, Yang; Li, Si-Qi; Yao, Run-Wen; Luan, Peng-Fei; Wu, Huang; Carmichael, Gordon G; Chen, Ling-Ling Molecular cell 2019 Dec;76(6):981-997.e7
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Translating the right way.
Carmichael, Gordon Nature reviews. Molecular cell biology 2019 Jun;
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H19 lncRNA Promotes Skeletal Muscle Insulin Sensitivity in Part by Targeting AMPK.
Geng, Tingting; Liu, Ya; Xu, Yetao; Jiang, Ying; Zhang, Na; Wang, Zhangsheng; Carmichael, Gordon G; Taylor, Hugh S; Li, Da; Huang, Yingqun Diabetes 2018 Sep;672183-2198
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Elevated hepatic expression of H19 long noncoding RNA contributes to diabetic hyperglycemia.
Zhang, Na; Geng, Tingting; Wang, Zhangsheng; Zhang, Ruling; Cao, Tiefeng; Camporez, Joao Paulo; Cai, Shi-Ying; Liu, Ya; Dandolo, Luisa; Shulman, Gerald I; Carmichael, Gordon G; Taylor, Hugh S; Huang, Yingqun JCI insight 2018 May;3(10):
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High-throughput and site-specific identification of 2'-O methylation sites using ribose oxidation sequencing (RibOxi-seq).
Zhu, Yinzhou; Pirnie, Stephan P; Carmichael, Gordon G RNA (New York, N.Y.) 2017 May;231303-1314
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An Ultraconserved Element (UCE) controls homeostatic splicing of ARGLU1 mRNA.
Pirnie, Stephan P; Osman, Ahmad; Zhu, Yinzhou; Carmichael, Gordon G Nucleic acids research 2016 Nov;453473-3486
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Metformin alters DNA methylation genome-wide via the H19/SAHH axis.
Zhong, T; Men, Y; Lu, L; Geng, T; Zhou, J; Mitsuhashi, A; Shozu, M; Maihle, N J; Carmichael, G G; Taylor, H S; Huang, Y Oncogene 2016 Oct;362345-2354
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Global Analysis of Mouse Polyomavirus Infection Reveals Dynamic Regulation of Viral and Host Gene Expression and Promiscuous Viral RNA Editing.
Garren, Seth B; Kondaveeti, Yuvabharath; Duff, Michael O; Carmichael, Gordon G PLoS pathogens 2015 Sep;11(9):e1005166
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Attenuated Innate Immunity in Embryonic Stem Cells and Its Implications in Developmental Biology and Regenerative Medicine.
Guo, Yan-Lin; Carmichael, Gordon G; Wang, Ruoxing; Hong, Xiaoxiao; Acharya, Dhiraj; Huang, Faqing; Bai, Fengwei Stem cells (Dayton, Ohio) 2015 Jun;33(11):3165-73
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My RNA world: past, present and future.
Carmichael, Gordon RNA (New York, N.Y.) 2015 Apr;21(4):578-9
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SnoVectors for nuclear expression of RNA.
Yin, Qing-Fei; Hu, Shi-Bin; Xu, Ye-Fen; Yang, Li; Carmichael, Gordon G; Chen, Ling-Ling Nucleic acids research 2015 Jan;43(1):e5
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H19 lncRNA alters DNA methylation genome wide by regulating S-adenosylhomocysteine hydrolase.
Zhou, Jichun; Yang, Lihua; Zhong, Tianyu; Mueller, Martin; Men, Yi; Zhang, Na; Xie, Juanke; Giang, Karolyn; Chung, Hunter; Sun, Xueguang; Lu, Lingeng; Carmichael, Gordon G; Taylor, Hugh S; Huang, Yingqun Nature communications 2015 Jan;610221
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The H19/let-7 double-negative feedback loop contributes to glucose metabolism in muscle cells.
Gao, Yuan; Wu, Fuju; Zhou, Jichun; Yan, Lei; Jurczak, Michael J; Lee, Hui-Young; Yang, Lihua; Mueller, Martin; Zhou, Xiao-Bo; Dandolo, Luisa; Szendroedi, Julia; Roden, Michael; Flannery, Clare; Taylor, Hugh; Carmichael, Gordon G; Shulman, Gerald I; Huang, Yingqun Nucleic acids research 2014 Nov;42(22):13799-811
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Innate immunity in pluripotent human cells: attenuated response to interferon-β.
Hong, Xiao-Xiao; Carmichael, Gordon G The Journal of biological chemistry 2013 May;288(22):16196-205
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Long noncoding RNAs with snoRNA ends.
Yin, Qing-Fei; Yang, Li; Zhang, Yang; Xiang, Jian-Feng; Wu, Yue-Wei; Carmichael, Gordon G; Chen, Ling-Ling Molecular cell 2012 Oct;48(2):219-30
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Nuclear Editing of mRNA 3'-UTRs.
Chen, Ling-Ling; Carmichael, Gordon G Current topics in microbiology and immunology 2012 Jan;353111-21
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Genome-wide studies reveal that Lin28 enhances the translation of genes important for growth and survival of human embryonic stem cells.
Peng, Shuping; Chen, Ling-Ling; Lei, Xin-Xiang; Yang, Li; Lin, Haifan; Carmichael, Gordon G; Huang, Yingqun Stem cells (Dayton, Ohio) 2011 Mar;29(3):496-504
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Genomewide characterization of non-polyadenylated RNAs.
Yang, Li; Duff, Michael O; Graveley, Brenton R; Carmichael, Gordon G; Chen, Ling-Ling Genome biology 2011 Jan;12(2):R16
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Molecular basis for an attenuated cytoplasmic dsRNA response in human embryonic stem cells.
Chen, Ling-Ling; Yang, Li; Carmichael, Gordon G Cell cycle (Georgetown, Tex.) 2010 Sep;9(17):3552-64
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Decoding the function of nuclear long non-coding RNAs.
Chen, Ling-Ling; Carmichael, Gordon G Current opinion in cell biology 2010 Jun;22(3):357-64
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Long noncoding RNAs in mammalian cells: what, where, and why?
Chen, Ling-Ling; Carmichael, Gordon G Wiley interdisciplinary reviews. RNA 2010 Jan;1(1):2-21
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Altered nuclear retention of mRNAs containing inverted repeats in human embryonic stem cells: functional role of a nuclear noncoding RNA.
Chen, Ling-Ling; Carmichael, Gordon G Molecular cell 2009 Aug;35(4):467-78
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Gene regulation by sense-antisense overlap of polyadenylation signals.
Gu, Rui; Zhang, Zuo; DeCerbo, Joshua N; Carmichael, Gordon G RNA (New York, N.Y.) 2009 Jun;15(6):1154-63
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RNA processing in the polyoma virus life cycle
Y. Huang and G.G. Carmichael Front Biosci 2009 Jan;144968-4977
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Gene regulation by SINES and inosines: biological consequences of A-to-I editing of Alu element inverted repeats.
Chen, Ling-Ling; Carmichael, Gordon G Cell cycle (Georgetown, Tex.) 2008 Nov;7(21):3294-301
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On the mechanism of induction of heterochromatin by the RNA-binding protein vigilin.
Zhou, Jing; Wang, Qiaoqiao; Chen, Ling-Ling; Carmichael, Gordon G RNA (New York, N.Y.) 2008 Sep;14(9):1773-81
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Alu element-mediated gene silencing.
Chen, Ling-Ling; DeCerbo, Joshua N; Carmichael, Gordon G The EMBO journal 2008 Jun;27(12):1694-705
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ADAR editing wobbles the microRNA world.
Das, Asis K; Carmichael, Gordon G ACS chemical biology 2007 Apr;2(4):217-20
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Evidence for variation in abundance of antisense transcripts between multicellular animals but no relationship between antisense transcriptionand organismic complexity.
Sun, Miao; Hurst, Laurence D; Carmichael, Gordon G; Chen, Jianjun Genome research 2006 Jul;16(7):922-33
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Vigilins bind to promiscuously A-to-I-edited RNAs and are involved in the formation of heterochromatin.
Wang, Qiaoqiao; Zhang, Zuo; Blackwell, Katherine; Carmichael, Gordon G Current biology : CB 2005 Feb;15(4):384-91
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Evidence for a preferential targeting of 3'-UTRs by cis-encoded natural antisense transcripts.
Sun, Miao; Hurst, Laurence D; Carmichael, Gordon G; Chen, Jianjun Nucleic acids research 2005 Jan;33(17):5533-43
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Methods for the analysis of adenosine-to-inosine editing in RNA
Z. Zhang and G.G. Carmichael Methods Mol Biol 2004 Jan;25775-84
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The fate of dsRNA in the nucleus: a p54(nrb)-containing complex mediates the nuclear retention of promiscuously A-to-I edited RNAs.
Zhang, Z; Carmichael, G G Cell 2001 Aug;106(4):465-75
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Regulation of the rapamycin and FKBP-target 1/mammalian target of rapamycin and cap-dependent initiation of translation by the c-Abl protein-tyrosine kinase.
Kumar, V; Sabatini, D; Pandey, P; Gingras, A C; Majumder, P K; Kumar, M; Yuan, Z M; Carmichael, G; Weichselbaum, R; Sonenberg, N; Kufe, D; Kharbanda, S The Journal of biological chemistry 2000 Apr;275(15):10779-87
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Functional interaction between RAFT1/FRAP/mTOR and protein kinase cdelta in the regulation of cap-dependent initiation of translation.
Kumar, V; Pandey, P; Sabatini, D; Kumar, M; Majumder, P K; Bharti, A; Carmichael, G; Kufe, D; Kharbanda, S The EMBO journal 2000 Mar;19(5):1087-97
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The fate of double-stranded RNA in the nucleus: Antisense regulation in polyoma virus infected cells
Carmichael, G. G., Kumar, M., and Zhang, Z Blood Cells, Molec. Dis 2000 Jan;2657-58
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Intronless mRNA transport elements may affect multiple steps of pre-mRNA processing.
Huang, Y; Wimler, K M; Carmichael, G G The EMBO journal 1999 Mar;18(6):1642-52
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Antisense RNA: function and fate of duplex RNA in cells of higher eukaryotes.
Kumar, M; Carmichael, G G Microbiology and molecular biology reviews : MMBR 1998 Dec;62(4):1415-34
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An improved rapid method of isolating RNA from cultured cells.
Batt, D B; Carmichael, G G; Liu, Z Methods in molecular biology (Clifton, N.J.) 1998 Jan;8615-7
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The mouse histone H2a gene contains a small element that facilitates cytoplasmic accumulation of intronless gene transcripts and of unspliced HIV-1-related mRNAs.
Huang, Y; Carmichael, G G Proceedings of the National Academy of Sciences of the United States of America 1997 Sep;94(19):10104-9
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An alternative pathway for gene regulation by Myc.
Peukert, K; Staller, P; Schneider, A; Carmichael, G; Hänel, F; Eilers, M The EMBO journal 1997 Sep;16(18):5672-86
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Nuclear antisense RNA induces extensive adenosine modifications and nuclear retention of target transcripts.
Kumar, M; Carmichael, G G Proceedings of the National Academy of Sciences of the United States of America 1997 Apr;94(8):3542-7
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Transcription from plasmid expression vectors is increased up to 14-fold when plasmids are transfected as concatemers.
Leahy, P; Carmichael, G G; Rossomando, E F Nucleic acids research 1997 Jan;25(2):449-50
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A suboptimal 5' splice site is a cis-acting determinant of nuclear export of polyomavirus late mRNAs.
Huang, Y; Carmichael, G G Molecular and cellular biology 1996 Nov;16(11):6046-54
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Role of polyadenylation in nucleocytoplasmic transport of mRNA.
Huang, Y; Carmichael, G G Molecular and cellular biology 1996 Apr;16(4):1534-42
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Novel biotinylated plasmid expression vectors retain biological function and can bind streptavidin.
Leahy, P; Carmichael, G G; Rossomando, E F Bioconjugate chemistry 1996 Jan;7(5):545-51
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The sequence and context of the 5' splice site govern the nuclear stability of polyoma virus late RNAs.
Barrett, N L; Li, X; Carmichael, G G Nucleic acids research 1995 Dec;23(23):4812-7
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Effects of ethanol concentration and incubation period at 65 degrees C on CAT activity in mammalian cell extracts.
Leahy, P; Carmichael, G G; Rossomando, E F BioTechniques 1995 Dec;19(6):894-8
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Characterization of the polyomavirus late polyadenylation signal.
Batt, D B; Carmichael, G G Molecular and cellular biology 1995 Sep;15(9):4783-90
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Nuclear antisense RNA. An efficient new method to inhibit gene expression.
Liu, Z; Carmichael, G G Molecular biotechnology 1994 Oct;2(2):107-18
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Polyadenylation and transcription termination in gene constructs containing multiple tandem polyadenylation signals.
Batt, D B; Luo, Y; Carmichael, G G Nucleic acids research 1994 Jul;22(14):2811-6
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Targeted nuclear antisense RNA mimics natural antisense-induced degradation of polyoma virus early RNA.
Liu, Z; Batt, D B; Carmichael, G G Proceedings of the National Academy of Sciences of the United States of America 1994 May;91(10):4258-62
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Splice site selection in polyomavirus late pre-mRNA processing.
Batt, D B; Rapp, L M; Carmichael, G G Journal of virology 1994 Mar;68(3):1797-804
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An improved rapid method of isolating RNA from cultured cells by SDS-acid phenol/chloroform extraction.
Zhong, L; Batt, D B; Carmichael, G G BioTechniques 1994 Jan;16(1):56-7
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Polyoma virus early-late switch: regulation of late RNA accumulation by DNA replication.
Liu, Z; Carmichael, G G Proceedings of the National Academy of Sciences of the United States of America 1993 Sep;90(18):8494-8
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Simple, inexpensive preparation of T1/T2 ribonuclease suitable for use in RNase protection experiments.
Lichtler, A; Barrett, N L; Carmichael, G G BioTechniques 1992 Feb;12(2):231-2
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Splice site skipping in polyomavirus late pre-mRNA processing.
Luo, Y; Carmichael, G G Journal of virology 1991 Dec;65(12):6637-44
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Splice site choice in a complex transcription unit containing multiple inefficient polyadenylation signals.
Luo, Y; Carmichael, G G Molecular and cellular biology 1991 Oct;11(10):5291-300
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Splice site requirement for the efficient accumulation of polyoma virus late mRNAs.
Barrett, N L; Carmichael, G G; Luo, Y Nucleic acids research 1991 Jun;19(11):3011-7
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Polyomavirus late pre-mRNA processing: DNA replication-associated changes in leader exon multiplicity suggest a role for leader-to-leader splicing in the early-late switch.
Hyde-DeRuyscher, R P; Carmichael, G G Journal of virology 1990 Dec;64(12):5823-32
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Enhancer and promoter elements from simian virus 40 and polyomavirus can substitute for an upstream activation sequence in Saccharomyces cerevisiae.
Axelrod, N J; Carmichael, G G; Farabaugh, P J Molecular and cellular biology 1990 Mar;10(3):947-57
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Replication-dependent transactivation of the polyomavirus late promoter.
Cahill, K B; Roome, A J; Carmichael, G G Journal of virology 1990 Mar;64(3):992-1001
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Deletion analysis of the polyomavirus late promoter: evidence for both positive and negative elements in the absence of early proteins.
Cahill, K B; Carmichael, G G Journal of virology 1989 Sep;63(9):3634-42
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Leader-to-leader splicing is required for efficient production and accumulation of polyomavirus late mRNAs.
Adami, G R; Marlor, C W; Barrett, N L; Carmichael, G G Journal of virology 1989 Jan;63(1):85-93
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Translational efficiencies of polyomavirus late mRNA molecules that differ in the sequences of their 5' noncoding late leader exons.
Rhee, E; Carmichael, G G Journal of virology 1989 Jan;63(1):432-5
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Polyomavirus early-late switch is not regulated at the level of transcription initiation and is associated with changes in RNA processing.
Hyde-DeRuyscher, R; Carmichael, G G Proceedings of the National Academy of Sciences of the United States of America 1988 Dec;85(23):8993-7
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The length but not the sequence of the polyoma virus late leader exon is important for both late RNA splicing and stability.
Adami, G R; Carmichael, G G Nucleic acids research 1987 Mar;15(6):2593-610
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Polyoma tumor induction in mice: influences of viral coding and non-coding sequences on tumor profiles
R. Freund, G. Mandel, G.G. Carmichael, J. Barncastle, C.J. Dawe and T.L. Benjamin J. Virol. 1987 Jan;61(7):2232-2239
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A method for constructing multiple tandem repeats of specific DNA fragments.
Cohen, B; Carmichael, G G DNA (Mary Ann Liebert, Inc.) 1986 Aug;5(4):339-43
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Polyomavirus late leader region serves an essential spacer function necessary for viability and late gene expression.
Adami, G R; Carmichael, G G Journal of virology 1986 May;58(2):417-25
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Residual transforming activity of PY1178T, a mutant lacking the principal in vitro tyrosine phosphorylation site, is not affected by removal of the secondary tyrosine phosphorylation site at residue 322.
Schaffhausen, B S; Liang, T J; Carmichael, G G; Benjamin, T L Virology 1985 Jun;143(2):671-5
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Transformation by polyoma virus is drastically reduced by substitution of phenylalanine for tyrosine at residue 315 of middle-sized tumor antigen.
Carmichael, G; Schaffhausen, B S; Mandel, G; Liang, T J; Benjamin, T L Proceedings of the National Academy of Sciences of the United States of America 1984 Feb;81(3):679-83
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A polyoma mutant encoding small but not middle T antigen demonstrates uncoupling of cell surface and cytoskeletal changes associated with cellular transformation
T.J. Liang, G.G. Carmichael and T.L. Benjamin Mol. Cell. Biol. 1984 Jan;4(12):2774-2785
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Biologic properties of viable deletion mutants of simian virus 40 (SV40) rescued from the cells of an SV40-induced hamster lymphocytic leukemia.
Diamandopoulos, G T; Carmichael, G Journal of the National Cancer Institute 1983 Dec;71(6):1319-26
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Carboxy terminus of polyoma middle-sized tumor antigen is required for attachment to membranes, associated protein kinase activities, and cell transformation.
Carmichael, G G; Schaffhausen, B S; Dorsky, D I; Oliver, D B; Benjamin, T L Proceedings of the National Academy of Sciences of the United States of America 1982 Jun;79(11):3579-83
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Mutant carrying deletions in the two simian virus 40 early genes.
Feunteun, J; Carmichael, G; Nicolas, J C; Kress, M Journal of virology 1981 Dec;40(3):625-34
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Identification of DNA sequence changes leading to loss of transforming ability in polyoma virus.
Carmichael, G G; Benjamin, T L The Journal of biological chemistry 1980 Jan;255(1):230-5
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Molecular weight determinations of RNA by gel electrophoresis
G.G. Carmichael Electrophoresis 1980 Jan;1(2):78-82
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The analysis of nucleic acids in gels using glyoxal and acridine orange.
Carmichael, G G; McMaster, G K Methods in enzymology 1980 Jan;65(1):380-91
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The hr-t gene of polyoma virus
Benjamin T. L., Carmichael G. G., Schaffhausen B. S. Cold Spring Harb Symp Quant Biol 1980 Jan;44 Pt 1263-70
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DNA sequence alterations in Hr-t deletion mutants of polyoma virus
Hattori J., Carmichael G. G., Benjamin T. L. Cell 1979 Jan;16(3):505-513
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Isolation of Escherichia coli 30 S ribosomal protein S1 by poly(rC)-cellulose chromatography.
Carmichael, G G Methods in enzymology 1979 Jan;60456-9
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RNA replication: function and structure of Qbeta-replicase
Blumenthal T., Carmichael G. G. Annu Rev Biochem 1979 Jan;48525-48
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Analysis of single- and double-stranded nucleic acids on polyacrylamide and agarose gels by using glyoxal and acridine orange.
McMaster, G K; Carmichael, G G Proceedings of the National Academy of Sciences of the United States of America 1977 Nov;74(11):4835-8
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Synthesis of RNA complementary of rabbit globin mRNA by Qbeta replicase.
Vournakis, J N; Carmichael, G G; Efstratiadis, A Biochemical and biophysical research communications 1976 Jun;70(3):774-82
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Immunochemical analysis of the functions of the subunits of phage Qbeta ribonucleic acid replicase.
Carmichael, G G; Landers, T A; Weber, K The Journal of biological chemistry 1976 May;251(9):2744-8
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Isolation of bacterial and phage proteins by homopolymer RNA-cellulose chromatography.
Carmichael, G G The Journal of biological chemistry 1975 Aug;250(15):6160-7
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The host factor required for RNA phage Qbeta RNA replication in vitro. Intracellular location, quantitation, and purification by polyadenylate-cellulose chromatography.
Carmichael, G G; Weber, K; Niveleau, A; Wahba, A J The Journal of biological chemistry 1975 Jan;250(10):3607-612
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Subunit I of G beta replicase and 30 S ribosomal protein S1 of Escherichia coli. Evidence for the identity of the two proteins.
Wahba, A J; Miller, M J; Niveleau, A; Landers, T A; Carmichael, G G; Weber, K; Hawley, D A; Slobin, L I The Journal of biological chemistry 1974 May;249(10):3314-6