Reinhard C. Laubenbacher, Ph.D.Adjunct Professor, Department of Cell Biology
|
- Overview
- Education & Training
- Committees & Organizations
- Research
- Lab Rotations
- Publications
- Presentations
Dr. Laubenbacher joined the University of Connecticut Health Center in May 2013 as Professor in the Department of Cell Biology and Co-Director of the Center for Quantitative Medicine. Prior to this appointment, he served as a Professor at the Virginia Bioinformatics Institute and a Professor in the Department of Mathematics at Virginia Tech since 2001. He was also an Adjunct Professor in the Department of Cancer Biology at Wake Forest University in Winston-Salem (NC) and Affiliate Faculty in the Virginia Tech Wake Forest University School of Biomedical Engineering and Sciences. In addition, Dr. Laubenbacher was also Professor of Mathematics at New Mexico State University. He has served as Visiting Faculty at Los Alamos National Laboratories, was a member of the Mathematical Science Research Institute at Berkeley in 1998, and was a Visiting Associate Professor at Cornell University in 1990 and 1993. Current interests in Dr. Laubenbacher’s research group include the development of mathematical algorithms and their application to problems in systems biology, in particular the modeling and simulation of molecular networks. An application area of particular interest is cancer systems biology, especially the role of iron metabolism in breast cancer.
Degree | Institution | Major |
---|---|---|
Other | University of Munich | Mathematics |
MA | Indiana University | Mathmatics |
PhD | Northwestern University | Mathematics |
Awards
Name of Award/Honor | Awarding Organization |
---|---|
Fellow of the Society for Mathematical Biology | Society for Mathematical Biology |
Fellow of the American Association for the Advancement of Science (AAAS) | American Association for the Advancement of Science |
Fellow of the American Mathematical Society | American Mathematical Society |
"Programs That Work" award for the Kids' Tech University outreach program | Virginia Department of Education and Virginia Math and Science Coalition |
Phi Delta Kappa Award for Excellence in Education | Phi Delta Kappa |
Patricia Christmore Teaching Award | New Mexico State University |
Fulbright Scholarship, 1977-1978 |
Name & Description | Category | Role | Type | Scope | Start Year | End Year |
---|---|---|---|---|---|---|
AAAS Section A (Mathematics) | Professional/Scientific Organization | Secretary | External | National | 2018 | |
Connecticut Pain Consortium | Professional/Scientific Organization | Director | External | National | 2018 | |
Program Committee, 15th Conference on Computational Methods for Systems Biology, Darmstadt, Germany | Workshop/Conference | Member | External | International | 2017 | 2017 |
American Mathematical Society Liaison Committee to AAAS | Professional/Scientific Organization | Member | External | National | 2017 | |
Organizing Committee, Symposium on “A Precision Medicine Approach to Pain,” Jackson Laboratory for Genomic Medicine | Chair | External | State | 2017 | 2017 | |
MIRA Study Section | Study Section | Member | External | National | 2016 | 2016 |
Bulletin of Mathematical Biology | Editorial Board | Editor-in-Chief | External | National | 2016 | |
Topics in Scientific Computation | Professional/Scientific Organization | Co-instructor | UConn-Storrs | University | 2015 | |
NSF REU Summer Institute in Mathematics for Undergraduates, UConn Health | Education Committee | Seminar leader | UConn Health | National | 2015 | 2017 |
Program Committee, 5th International Workshop on Static Analysis and Systems Biology, Munich, Germany | Workshop/Conference | Member | External | International | 2014 | 2014 |
Program Committee, 12th International Conference on Computational Methods in Systems Biology, University of Manchester, Manchester, England | Member | External | International | 2014 | 2014 | |
Program Committee, SIAM Conference on Applications of Algebraic Geometry, Colorado State U. | Workshop/Conference | Member | External | National | 2013 | 2013 |
NIAID Study Section, Omics Technologies for Predictive Modeling of Infectious Diseases | Study Section | Ad hoc member | External | National | 2013 | 2013 |
BMC Systems Biology | Editorial Board | Member | External | National | 2013 | |
Multiscale Immune System Simulator for the Onset of Type 2 Diabetes, European Framework 7 project coordinated by Consiglio Nazionale della Ricerche | Advisory Committee | Member | External | International | 2013 | 2017 |
Host-Pathogen Working Group, Malaria Host-Pathogen Interaction Center, Emory University | Advisory Committee | Member | External | University | 2013 | 2017 |
International Conference on Cell Biology, Virginia Tech | Workshop/Conference | Co-chair | External | University | 2013 | 2013 |
Program Committee, 2012 RECOMB Conference on Regulatory and Systems Genomics, with DREAM Challenges, San Francisco. | Workshop/Conference | Member | External | National | 2012 | 2012 |
Steering Committee, Visual Analytics in Biology Curriculum Network, Jackson State University, Jackson, MS, NSF funded | Advisory Committee | Member | External | University | 2011 | 2013 |
Mathematical Biosciences Institute, Ohio State University | Advisory Committee | Member | External | University | 2011 | 2013 |
Special issue, Bull. Math. Biol. 73, Algebraic Methods in Mathematical Biology. | Editorial Board | Editor | External | National | 2011 | |
Special issue on "Biomathematics: Newly developed, appplied mathematics and new mathematics arising from biosciences," Discrete and Continuous Dynamical Systems | Editorial Board | Member | External | National | 2011 | |
Working Group on Optimal Control of Agent-based Models, National Institute for Mathematical and Biological Synthesis (NIMBioS) | Workshop/Conference | Co-organizer | External | National | 2011 | 2013 |
Organizing Committee, program on "Stochastics in Biological 'Systems,",Mathematical Bioscienqes Institute" | Workshop/Conference | Member | External | National | 2011 | 2012 |
Study Section on Cancer Genetics, National Cancer Institute | Study Section | Ad Hoc Member | External | National | 2010 | |
Subcommittee on Research and Education of the House Committee on Science and Technology | Other | Expert witness | External | National | 2010 | |
Biological Data Management and Analysis, National Institute for General Medical Sciences | Study Section | Member | External | State | 2010 | |
Program Committee, 21st International Conference on Database and Expert System Applications | Workshop/Conference | Member | External | National | 2010 | 2010 |
Organizing Committee, workshop on "Bootcamp on Cancer Modeling," Mathematical Biosciences Institute | Workshop/Conference | Member | External | National | 2010 | 2010 |
Society for Industrial and Applied Mathematics | Professional/Scientific Organization | Vice President for Science Policy | External | National | 2009 | 2013 |
Committee on Science Policy, Society for Industrial and Applied Mathematics | Professional/Scientific Organization | Chair | External | National | 2009 | 2013 |
Kids' Tech University (http://kidstechuniversity.org) | Education Committee | Founder and President | External | University | 2009 | |
Study Section on Molecular Oncology, National Cancer Institute | Study Section | Member | External | National | 2009 | |
Organizing Committee, workshop on "Mathematical Developments Arising from Biology," Mathematical Biosciences Institute | Workshop/Conference | Member | External | National | 2009 | 2009 |
Organizing Committee, workshop. on "Optimal Control and optimization for Individual-based and Agent-based Models," National Institute for Mathematical and Biological Synthesis | Workshop/Conference | Member | External | National | 2009 | 2009 |
Systems Biology Working Group, NIAID Advisory Panel to five Pathosystems Biology Centers | Advisory Committee | Member | External | National | 2009 | 2013 |
Committee on Science Policy, Society for Industrial and Applied Mathematics | Professional/Scientific Organization | Member | External | National | 2009 | |
Society for Industrial and Applied Mathematics, Committee on Committees | Professional/Scientific Organization | Member | External | National | 2008 | 2009 |
Journal of Algebra | Editorial Board | Member | External | National | 2008 | 2018 |
Bulletin of Mathematical Biology | Editorial Board | Member | External | National | 2008 | 2016 |
Minority Serving Institutions Advisory Council, Virginia Tech | Advisory Committee | Member | External | University | 2008 | 2009 |
Program on Algebraic Methods in Systems Biology and Statistics, Statistical and Applied Mathematical Sciences Institute | Workshop/Conference | Program Leader | External | National | 2008 | 2009 |
Special Session on "Combinatorics and Discrete Dynamical Systems," 1st Joint Intl. Meeting of AMS and Shanghai Mathematical Soc., Shanghai, China | Workshop/Conference | Co-organizer | External | International | 2008 | 2008 |
Program Committee, 2nd International Conference on Bioinformatics Research and Development (BIRD), Vienna, Austria | Workshop/Conference | Member | External | International | 2008 | 2008 |
Program Committee, Mathematical Theory of Networks and Systems (MTNS) | Workshop/Conference | Member | External | National | 2008 | 2008 |
NSF REU Summer Institute in Mathematics for Undergraduates, Virginia Tech | Education Committee | Seminar leader | External | University | 2008 | 2013 |
Special Session on “Biomathematics: Newly Developed Applied Mathematics and New Mathematics Arising from Biosciences, 1st Joint Intl. Meeting of AMS and Shanghai Mathematical Society | Workshop/Conference | Co-organizer | External | International | 2008 | 2008 |
Program Committee, RECOMB Systems Biology | Workshop/Conference | Member | External | National | 2007 | |
1st Canadian Discrete & Algorithmic Mathematics Conf. (CanaDAM), Alberta, Canada | Workshop/Conference | Co-organizer | External | International | 2007 | 2007 |
Atlantic Coast Conf. on Mathematics in the Life & Biological Sciences | Workshop/Conference | Co-organizer | External | National | 2007 | 2007 |
Program Committee, 9th Annual Computational Genomics Conference, Baltimore | Workshop/Conference | Member | External | National | 2006 | 2006 |
AMS Short Course on Mathematical Methods in Computational Biology, AMS-MAA-SiAM Joint Meetings | Workshop/Conference | Organizer | External | National | 2006 | 2006 |
MSRI' Graduate Summer Workshop on Mathematical Methods in Computational Biology | Workshop/Conference | Co-organizer and co-principal lecturer | External | University | 2006 | 2006 |
Steering Committee for Activity Group in Algebraic Geometry, Society for Industrial and Applied Mathematics (SIAM) | Advisory Committee | Member | External | National | 2005 | 2010 |
Alliance for the Advancement of Biomedical Research Excellence in Puerto Rico (AABRE-PR) | Advisory Committee | Member | External | International | 2005 | |
Program Committee, First International Conference on Algebraic Biology,Tokyo | Workshop/Conference | Member | External | International | 2005 | 2005 |
Journal of Symbolic Computation | Editorial Board | Member | External | National | 2003 | |
Steering Committee, Interdepartmental Ph.D. Program "Genetics, Bioinformatics, and Computational Biology" | Advisory Committee | Member | External | University | 2003 | 2013 |
External advisory committee to the NIH-funded Biomedical Research Infrastructure Network, University of Puerto Rico | Advisory Committee | Member | UConn Health | International | 2003 | 2006 |
Session on genetic networks, International Symposium on the Mathematical Theory of Networks and Systems (MTNS) | Workshop/Conference | Organizer | External | International | 2002 | 2002 |
Joint U.S.-Canadian Conference on Symbolic Computational Algebra, Waterloo, Ontario | Workshop/Conference | Co-organizer | External | International | 2002 | 2002 |
Program Committee, International Symposium on Symbolic & Algebraic Computation(ISSAC) | Workshop/Conference | Member | External | International | 2001 | 2001 |
NSF REU Summer Institute in Mathematics for Undergraduates, University of Puerto Rico | Education Committee | Seminar leader | External | International | 2000 | 2001 |
AMS-SIAM summer conf. "Symbolic Computation and Polynomial System Solving" | Workshop/Conference | Co-organizer | External | National | 2000 | 2000 |
Conference on "Cryptography as a Teaching Tool," for NM high school teachers | Workshop/Conference | Organizer | External | State | 1998 | 1998 |
AMS Special Session on Computational Algebraic Geometry, Joint Annual Meetings of the AMS/MAA/SIAM | Workshop/Conference | Co-organizer | External | National | 1997 | 1997 |
22nd NMSU Holiday Symp. on "Rewriting techniques and Grobner bases" | Workshop/Conference | Co-organizer | External | National | 1996 | 1996 |
contributed paper session on "Teaching with Original Sources" at the 1995 National Meetings of the AMS/MAA | Workshop/Conference | Co-organizer | External | National | 1995 | 1995 |
21st NMSU Holiday Symposium on "Grabner Bases and Convex Polytopes" | Workshop/Conference | Co-organizer | External | University | 1994 | 1994 |
Applied Mathematical Sciences book series, Springer Verlag | Editorial Board | Member | External | National | ||
Mathematical Modelling: Theory and Applications book series, Springer Verlag | Editorial Board | Member | External | National | ||
National Science Foundation, National Institutes of Health, and National Academy of Sciences | Professional/Scientific Organization | Reviewer | External | National | ||
Various mathematical and scientific journals | Professional/Scientific Journal | Reviewer | External | National | ||
American Mathematical Society | Professional/Scientific Organization | Member | External | National | ||
Society for Industrial and Applied Mathematics | Professional/Scientific Organization | Member | External | National | ||
Association for Women in Mathematics | Professional/Scientific Organization | Member | External | State | ||
Society for Mathematical Biology | Professional/Scientific Organization | Member | External | National | ||
International Society for Systems Biology | Professional/Scientific Organization | Member | External | International | ||
Study Section on Multiscale Modeling, NIBIB | Study Section | Member | External | National | ||
American Association for the Advancement of Science | Professional/Scientific Organization | Member | External | National |
Computational biology, systems biology, cancer systems biology, modeling and simulation of biological networks, applied discrete mathematics, symbolic computation, computational algebra and algebraic geometry, mathematical foundation of computer simulation
Not accepting students for Lab Rotations at this time
Journal Articles
-
Agent Based Models of Polymicrobial Biofilms and the Microbiome-A Review.
Microorganisms 2021 Feb;9(2):
-
Systems biology of ferroptosis: A modeling approach.
Journal of theoretical biology 2020 May;493110222
-
Sensitivity of comorbidity network analysis
JAMIA Open 2019 Dec;2574-2531
-
PlantSimLab - a modeling and simulation web tool for plant biologists.
BMC bioinformatics 2019 Oct;20(1):508
-
The contribution of microRNA-mediated regulation to short- and long-term gene expression predictability.
Journal of theoretical biology 2019 Oct;486110055
-
Connecting the molecular function of microRNAs to cell differentiation dynamics.
Journal of the Royal Society, Interface 2019 Sep;16(158):20190437
-
A mathematical model of combined CD8 T cell costimulation by 4-1BB (CD137) and OX40 (CD134) receptors.
Scientific reports 2019 Jul;9(1):10862
-
Fostering bioinformatics education through skill development of professors: Big Genomic Data Skills Training for Professors.
PLoS computational biology 2019 Jun;15(6):e1007026
-
Topological Data Analysis.
Bulletin of mathematical biology 2019 May;
-
Dynamics of semilattice networks with strongly connected dependency graph
Automatica 2019 Jan;99167-174
-
An important role for periplasmic storage in Pseudomonas aeruginosa copper homeostasis revealed by a combined experimental and computational modeling study.
Molecular microbiology 2018 Jul;110357-369
-
A Systems Biology Approach to Understanding the Pathophysiology of High-Grade Serous Ovarian Cancer: Focus on Iron and Fatty Acid Metabolism.
Omics : a journal of integrative biology 2018 Jul;22(7):502-513
-
The innate immune response to ischemic injury: a multiscale modeling perspective.
BMC systems biology 2018 Apr;12(1):50
-
Applications of network analysis to routinely collected health care data: a systematic review.
Journal of the American Medical Informatics Association : JAMIA 2018 Feb;25(2):210-221
-
The influence of canalization on the robustness of Boolean networks
Physica D: Nonlinear Phenomena 2017 Sep;353-35439-47
-
Multistate Nested Canalizing Functions and Their Networks
Theoretical Computer Science 2017 May;6751-14
-
Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective.
PLoS computational biology 2017 Feb;13(2):e1005352
-
Effects of research complexity and competition on the incidence and growth of coauthorship in biomedicine.
PloS one 2017 Jan;12(3):e0173444
-
Optimization and Control of Agent-Based Models in Biology: A Perspective.
Bulletin of mathematical biology 2016 Nov;7963-87
-
AlgoRun: a Docker-based packaging system for platform-agnostic implemented algorithms.
Bioinformatics (Oxford, England) 2016 Aug;32(15):2396-8
-
A computational model of invasive aspergillosis in the lung and the role of iron.
BMC systems biology 2016 Jan;10(1):34
-
Costimulation Endows Immunotherapeutic CD8 T Cells with IL-36 Responsiveness during Aerobic Glycolysis.
Journal of immunology (Baltimore, Md. : 1950) 2015 Nov;196124-34
-
Dimension reduction of large sparse AND-NOT network model
Electronic Notes in Theoretical Computer Science 2015 Sep;31683-95
-
Optimal Harvesting for a Predator-Prey Agent-Based Model using Difference Equations
Bulletin of Mathematical Biology 2015 Mar;77(3):434–459
-
A network biology approach to denitrification in Pseudomonas aeruginosa.
PloS one 2015 Jan;10(2):e0118235
-
Iron acquisition and oxidative stress response in aspergillus fumigatus.
BMC systems biology 2015 Jan;9(1):19
-
Using difference equations to find optimal tax structures on the SugarScape
Journal of Economic Interaction and Coordination 2014 Oct;9(2):233–253
-
Steady state analysis of Boolean molecular network models via model reduction and computational algebra.
BMC bioinformatics 2014 Jun;15221
-
A Mathematical Model of Skeletal Muscle Disease and Immune Response in the mdx Mouse
BioMed Research International 2014 Jun;2014
-
Optimization of agent-based models: scaling methods and heuristic algorithms
The Journal of Artificial Societies and Social Simulation 2014 Mar;
-
An algebra-based method for inferring gene regulatory networks.
BMC systems biology 2014 Mar;8(37):37
-
Evolutionary events in a mathematical sciences research collaboration network
Scientometrics 2013 Dec;99(3):973–998
-
Structure and dynamics of acyclic networks
Discrete Event Dynamic Systems 2013 Oct;24(4):647–658
-
The genome-wide early temporal response of Saccharomyces cerevisiae to oxidative stress induced by cumene hydroperoxide.
PloS one 2013 Sep;8(9):e74939
-
Stabilizing gene regulatory networks through feedforward loops.
Chaos (Woodbury, N.Y.) 2013 Jun;23(2):025107
-
Boolean nested canalizing functions: A comprehensive analysis
Theoretical Computer Science 2013 Apr;48124-36
-
AND-NOT logic framework for steady state analysis of Boolean network models
Applied Mathematics & Information Sciences 2012 Nov;
-
Modeling stochasticity and variability in gene regulatory networks.
EURASIP journal on bioinformatics & systems biology 2012 Jan;2012(1):5
-
Monomial dynamical systems over 𝔽 q with bidirectional cycle dependency graph
Far East Journal of Dynamical Systems 2012 Jan;77-93
-
The Number of Multistate Nested Canalyzing Functions
Physica D 2012 Jan;241(10):929-938
-
A mathematical framework for agent based models of complex biological networks.
Bulletin of mathematical biology 2011 Jul;73(7):1583-602
-
ADAM: analysis of discrete models of biological systems using computer algebra.
BMC bioinformatics 2011 Jan;12295
-
Bioinformatics tools for cancer metabolomics
Metabolomics 2011 Jan;7(3):329- 243
-
Boolean models of bistable biological systems
Discrete and Cont. Dynamical Systems 2011 Jan;4(6):1414-1456
-
Regulatory patterns in molecular interaction networks
J. Theor. Bioi. 2011 Jan;28866-72
-
High-order nonlinearity of silica-gold nanoshells in chloroform at 1560 nm.
Optics express 2010 Oct;18(21):21636-44
-
Different functions of the C3HC4 zinc RING finger peroxins PEX10, PEX2, and PEX12 in peroxisome formation and matrix protein import.
Proceedings of the National Academy of Sciences of the United States of America 2010 Aug;107(33):14915-20
-
The dynamics of conjunctive and disjunctive Boolean network models.
Bulletin of mathematical biology 2010 Aug;72(6):1425-47
-
Discretization of time series data
J. Compo BioI. 2010 Jan;17(6):853-868
-
Polynomial Algebra of Discrete Models in Systems Biology
Bioinformatics 2010 Jan;261637-1643
-
On the robustness of update schedules in Boolean networks.
Bio Systems 2009 Jul;97(1):1-8
-
A general map of iron metabolism and tissue-specific subnetworks.
Molecular bioSystems 2009 May;5(5):422-43
-
Discrete dynamical system modelling for gene regulatory networks of 5-hydroxymethylfurfural tolerance for ethanologenic yeast.
IET systems biology 2009 May;3(3):203-18
-
Algebraic models in systems biology
Methods in Enzymology 2009 Jan;467163-196
-
Computer algebra in systems biology
The American Mathematical Monthly 2009 Jan;116882-891
-
Kids' Tech University: Shaping the future of science.
Virginia Tech Magazine 2009 Jan;32(2):
-
Mathematical biology education: beyond calculus
Science 2009 Jan;325(5940):542-543
-
Inference of ecological networks
Annales Zoologici Fennici 2008 Oct;45(5):459-464
-
The effect of negative feedback loops on the dynamics of boolean networks.
Biophysical journal 2008 Jul;95(2):518-26
-
A virtual look at Epstein-Barr virus infection: simulation mechanism.
Journal of theoretical biology 2008 Jun;252(4):633-48
-
Using formal concept analysis for microarray data comparison.
Journal of bioinformatics and computational biology 2008 Feb;6(1):65-75
-
Fall Update for SIAM
SIAM News 2008 Jan;41(9):3
-
'Model your genes the mathematical way' -a mathematical biology workshop for secondary school teachers
Teaching Mathematics and its Applications 2008 Jan;2791-101
-
Model your genes the mathematical way: a mathematical biology workshop for secondary school teachers
Teaching Mathematics and its Applications 2008 Jan;27(2):91-101
-
The Cyclicity Problem for Twodimensional Polynomial Systems, Differential Equations and Control Processes
Electronic journal, ISSN 1817-2172, http://gamma.niimm.spb.su/diffjournal/ilRU/nurnbers/2008.2/article.74.html 2008 Jan;
-
Comparison of reverse-engineering methods using an in silico network.
Annals of the New York Academy of Sciences 2007 Dec;111573-89
-
Nested Canalyzing, Unate Cascade, and Polynomial Functions.
Physica D. Nonlinear phenomena 2007 Sep;233(2):167-174
-
A Virtual Look at Epstein-Barr Virus Infection: Biological
Interpretations
PLoS Pathog 2007 Jan;3(10):1388-400
-
Discrete Models of Biochemical Networks: The Toric Variety of Nested Canalyzing Functions
Proc. of the Second Inti. Conf. on Algebraic Biology 2007 Jan;454515-22
-
Fixed points in discrete models for regulatory genetic networks.
EURASIP journal on bioinformatics & systems biology 2007 Jan;1697356
-
Reverse-Engineering of Dynamic Networks
Annals of the New York Academy of Sciences 2007 Jan;1115168-177
-
Reverse-engineering polynomial dynamical systems
Adv. In Appl. Math. 2007 Jan;39477-489
-
Simulating Epstein-Barr virus infection with C-ImmSim.
Bioinformatics (Oxford, England) 2007 Jan;23(11):1371-7
-
A single instrument: engineering and engineering technology students demonstrating competence in ethics and professional standards.
Science and engineering ethics 2006 Apr;12(2):291-311
-
Perspectives on A-homotopy theory and its applications
Discrete Mathematics 2005 Jan;298: .39-61
-
A computational algebra approach to the reverse engineering of gene regulatory networks.
Journal of theoretical biology 2004 Aug;229(4):523-37
-
A computational algebra approach to the reverseengineering
of gene regulatory networks
J. Theor. Bioi. 2004 Jan;229523-537
-
An optimal control problem for in vitro virus competition
Proc. Of the 43rd IEEE Conference on Decision and Control, Bahamas, Dec. 2004 Jan;
-
Boolean Monomial Dynamical Systems
Annals of Combinatorics 2004 Jan;8425-439
-
Generic Cohen-Macaulay monomial ideals.
Ann. Comb. 2004 Jan;845-61
-
Decomposition and simulation of sequential dynamical systems
Advances in Applied Math 2003 Jan;30655-678
-
The Sibirsky component of the center variety of polynomial differential systems
J. Symbolic Comput. 2003 Jan;35577-589
-
Equivalence relations on finite dynamical systems
Advances in Applied Math 2001 Jan;237-251
-
Foundations of a connectivity, theory for simplicial complexes
Advances in Applied Math 2001 Jan;2697-128
-
Generic ideals and the Moreno-Socias conjecture
Proceedings of the 2001 International Symposium on Symbolic and Algebraic Computation 2001 Jan;
-
Lagrange and the solution of numerical equations
Historia Mathematica 2001 Jan;28220-231
-
A new algorithm for the Quillen-Suslin theorem for polynomial rings
Contributions to Algebra and Geometry 2000 Jan;4123-32
-
An algorithm for the Quillen-Suslin Theorem for quotients of polynomial rings by monomial ideals
Journal of Symbolic Computation 2000 Jan;30555-571
-
Permanental ideals
Journal of Symbolic Computation 2000 Jan;30195-205
-
Monomial orderings, rewriting systems, and Groebner bases for the commutator ideal of a free algebra
Journal of Symbolic Computation 1999 Jan;27133-141
-
On higher class groups of orders
Math. Zeitschrift 1998 Jan;228229-246
-
An algorithm to trivialize vector bundles over toric varieties
J. Pure and Applied Algebra 1997 Jan;117&118395-429
-
A normal form algorithm for modules over k[x,y]/(x,y)
J. of Algebra 1996 Jan;1841001-1024
-
Finitely generated modules over pullback rings
J of Algebra 1996 Jan;184304-322
-
Almost split sequences for dedekind-like rings (part II)
Comm. Algebra 1995 Jan;23111-130
-
Eisenstein's misunderstood geometric proof of the quadratic reciprocity theorem
College Mathematics Journal 1994 Jan;2529-34
-
Gauss, Eisenstein, and the "third" proof of the quadratic reciprocity theorem: ein kleines Schauspiel
Mathematicallntelligencer 1994 Jan;1667-72
-
Recovering motivation in mathematics: teaching with original sources
UME Trends 1994 Jan;6
-
Algebraic K-theory of poset representations
K-Theory 1993 Jan;717-21
-
SK2 and K3 of dihedral groups
Canadian Journal of Math 1992 Jan;44591-623
-
Almost split sequences for Dedekind-like rings (part I)
J. London Math. Soc. 1991 Jan;43225-235
-
The structure of the integral group ring of a finite group with cyclic sylow subgroups
Comm. Algebra 1991 Jan;192281-2290
-
Generalized Mayer-Vietoris sequences in algebraic K-theory
J. Pure and Applied Algebra 1988 Jan;51175-192
-
On the K-theory of ZG, G a group of square-free order, in J. F.
Jardine and V. P. Snaith, Algebraic K-theory: Connections With Geometry and Topology
NATO Adv. Sci. Inst. Ser. C Math. Phys. Sci 1987 Jan;279189-208
-
On the K-theory of ZG, G a non-abelian group of order pq
K-Theory 1987 Jan;1 499-506
-
Identification of control targets in Boolean molecular network models via computational algebra.
BMC systems biology 10(1):94
-
Optimal Harvesting for a Predator-Prey Agent-Based Model using Difference Equations
Bulletin of Mathematical Biology 77(3):434–459
-
The Number of Canalyzing Functions over Any Finite Set
Open Journal of Discrete Mathematics 3(3):130-136
Books
-
Mathematical Masterpieces. Undergraduate Texts in Mathematics. Readings in Mathematics 2007 Jan;
-
Modeling and simulation of biological networks, Symposia in Pure and Applied Mathematics, 2007 Jan;
-
Symbolic Computation: solving equations in algebra, geometry, and engineering 2001 Jan;
-
Mathematical expeditions. Chronicles by the explorers. Udergraduate Texts in Mathematics. Readings in Mathematics 1999 Jan;
-
Theory of Algebraic Invariants, translated from the German 1993 Jan;
Book Chapters
-
Boolean models in immunology
Systems Immunology: An Introduction to Modeling Methods for Scientists 2018 Sep;12
-
SIAM Review
Algebraic and Discrete Mathematical Methods for Modern Biology 2015 Mar;367-369
-
A systems biology approach to iron metabolism.
A Systems Biology Approach to Blood - Advances in Experimental Medicine and Biology 2014 Jan;
-
Computational Systems Biology: Discrete Models of Gene Regulation Networks.
Undergraduate Mathematics for the Life Sciences. 2013 Nov;189-200
-
Algebraic models and their use in systems biology
Discrete and Topological Models in Molecular Biology 2013 Oct;443-474
-
Computational systems biology: discrete models of gene regulatory networks
MAA Notes: Undergraduate Mathematics for the Life Sciences: Processes, Models, Assessment, and Directions 2013 Oct;189-200
-
Finite Fields in Biology
Handbook of Finite Fields 2013 Jun;
-
Agent-Based Models and Optimal Control in Biology: A Discrete Approach
Mathematical Concepts and Methods in Modern Biology: Using Modern Discrete Models 2013 Mar;143-178
-
A systems biology approach to cancer drug discovery
Encyclopedia of Systems Biology 2011 Jan;
-
Mathematics in the Public Mind: the U.S.A.
Public Awareness of Mathematics 2011 Jan;
-
Algebraic models of biochemical networks
Essential Bioimaging Methods, Reliable Lab Solutions series 2010 Jan;
-
Computational Systems Biology: Discrete Models of Gene Regulation Networks, in
Undergraduate Mathematics for the Life Sciences: Processes, Models, and Directions 2010 Jan;
-
The Inferelator 2.0: a scalable framework for reconstruction of dynamic regulatory network models.
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference 2009 Jan;20095448-51
-
The mathematics of agentbased modeling formalisms
Encyclopedia of Complexity and System Science 2009 Jan;
-
Implicit dose-response curves.
Journal of mathematical biology 2008 Jan;70(7):1669-84
-
A Groebner Fan based Method for Biochemical Network
Proceedings of ISSAC'2007 2007 Jan;122
-
A discrete approach to top-down modeling of biochemical networks
Computational Systems Biology 2006 Jan;
-
Combinatorial homotopy of simplicial complexes and applications to complex information systems
Applications of Computational Algebraic Geometry 1997 Jan;
-
Mathematical masterpieces: teaching with original sources
History of Mathematics: Sources, Studies and Pedagogic Integration 1996 Jan;
-
Go of integral group rings for groups with cyclic sylow
subgroups
Algebraic K-Theory, Commutative Algebra and Algebraic Geometry 1992 Jan;
-
On the K-theory of ZG, G a group of square-free order
Algebraic K-theory: Connections With Geometry and Topology 1987 Jan;
Abstracts
-
Structure and dynamics of polynomial dynamical systems
NSF Engineering Research and Innovation Conference, Atlanta 2011 Jan;
-
Inference of ecological interaction networks
Annales Zoologici Fennici 2008 Jan;45459-464
Conference Papers
-
The Role of Bioinformatics in Toxicogenomics and Proteomics.
"The Role of Bioinformatics in Toxicogenomics and Proteomics." Proceedings from NATO Advanced Workshop on Toxicogenomics and Proteomics. Prague, Czech Republic, October 16-20, 2002. 11. 2002 Jan;
Editorials
-
Editorial.
Bulletin of mathematical biology 2018 Aug;803069-3070
-
Editorial.
Bulletin of mathematical biology 2016 Dec;78(12):2303
-
Editorial.
Bulletin of mathematical biology 2016 Jan;781-3
-
Algebraic methods in mathematical biology
Bull. Math. Biol. 2011 Jan;73(4):701
Letters
-
Science advocacy
Notices of the Amer. Math. Soc. 2010 Jan;57(7):
Newsletters
-
Structural influence of gene networks on their inference: analysis of C3NET.
Biology direct 2011 Jan;6(10):31
-
Thoughts from SIAM's New VP
SIAM News 2009 Jan;42(1):12
-
A Mathematical Tragedy, Part II of II
Science News 2008 Jan;173(9):
-
A Woman Who Counted
Science 2008 Jan;319899
-
An Attack on Fermat, Part I of II
Science News 2008 Jan;173(8):
-
The Mathematical Biology Job Market
Science 2004 Jan;
-
History of mathematics and the internet
Newsletter of the British Society for the History of Mathematics 1996 Jan;2856-57
-
Great theorems: the art of mathematics'- a course based on original sources
International Study Group on the History and Pedagogy of Mathematics 1993 Jan;289-10
Other
-
You Can Do Anything With a Math Degree
American Mathematical Society 2015 Jan;
-
Congressional Testimony on 21st Century Biology
Hearing of the Subcommittee on Research and Education of the House Committee on Science and Technology http://science.house.gov/pu blications/Testimony.aspx?TID= 15466 2010 Jan;
-
Bringing math to life at Virginia Tech
The Roanoke Times 2009 Jan;
-
Integrated and interprofessional care.
International journal of integrated care 2008 Jan;12e135
-
Virginia Tech to become Kids' Tech, too.
Associated Press 2008 Jan;
-
Virginia Tech to Engage Kids In STEM
Education Week 2008 Jan;
-
PathSim Visualizer: an information rich virtual environment framework for systems biology,
Proc. SIGGRAPH Web3D Session 2004 Jan;
-
Issue on Symbolic Computation in Algebra, Analysis, and Geometry - Foreword of the Guest Editors
J. Symb. Comput. 2000 Jan;29(4-5):483
Reviews
-
Addressing current challenges in cancer immunotherapy with mathematical and computational modelling.
Journal of the Royal Society, Interface 2017 Jun;14(131):
Websites
-
Getting to grips with ecological interactions
Agricultural Biodiversity Weblog 2010 Jan;
-
A systems biology view of cancer.
BreastCancer.Net News 2009 Jan;
-
Kenneth McKechnie Eldred-A distinguished noise control engineer I.
The Journal of the Acoustical Society of America 2009 Jan;135(4):2215
-
Program engenders kids' scientific interests
The Collegiate Times 2009 Jan;
-
Systems biology recommended as clinical approach to cancer
Science Daily 2009 Jan;
-
Systems Biology: A Field of Unlimited Possibilities,
BioSpace Biotech and Pharmaceutical News and Jobs 2009 Jan;
Title or Abstract | Type | Sponsor/Event | Date/Year | Location |
---|---|---|---|---|
The role of iron metabolism in breast cancer | Talk | Institut Curie | 2018 | Paris, France |
Multi-scale models of disease | Lecture | Institut de Recherche et Interdisciplinarite | 2018 | Paris, France |
Multi-scale modeling of disease | Lecture | University of Illinois | 2018 | Urbana-Champaign, IL |
Dynamic connectivity of functional brain networks for emotion regulation | Talk | SIAM Life Sciences Meeting | 2018 | Minneapolis, MN |
The role of iron in tumor progression: a multiscale modeling approach | Talk | Society for Mathematical Biology/Annual Meeting | 2018 | Syndey, Australia |
From data to knowledge: The power of computational models | Lecture | Virginia Military Institute | 2018 | Lexington, VA |
Multiscale modeling of disease | Lecture | Yale Universit | 2017 | New Haven, CT |
Discrete Dynamic Networks | Lecture | CUNY-NYU Joint Symbolic-Numeric Computing Seminar | 2017 | New York, NY |
Turing, a software package for discrete modeling, | Talk | 2017 SIAM Conference on Applied Algebraic Geometry | 2017 | Atlanta, GA |
Modular design of multiscale models | Lecture | University Southern California/Da Vinci Convergence Symposium | 2017 | Los Angeles, CA |
Inference of molecular networks in systems biology | Lecture | University of Cincinnati School of Medicine | 2017 | Cincinnati, OH |
Iron metabolism and its role in breast cancer | Lecture | Oregon State University/Annual Conference on Computational Biology | 2017 | Corvallis, OR |
The role of mathematical models in the study and control of disease: a case study in breast cancer | Talk | Bristol-Myers Squibb | 2017 | New Jersey |
The “battle over iron” as part of the innate immune response to fungal infections in the lung | Talk | Bristol-Myers Squibb | 2017 | New Jersey |
Algebraic methods in computational biology | Lecture | University of Kentucky | 2016 | Lexington, KY |
Algebraic methods in systems biology | Lecture | Texas Tech University | 2016 | Lubbock, TX |
Algebraic Models in Systems Biology | Lecture | University of Buenos Aires | 2016 | Buenos Aires, Argentina |
Quantitative Medicine | Lecture | Amherst College | 2016 | Amherst, MA |
Computational Systems Biology | Talk | Jackson Laboratory for Genomic Medicine/Director’s Forum | 2016 | Farmington, CT |
Mathematics: A Driver of Precision Medicine | Lecture | Texas Tech University | 2016 | Lubbock, TX |
Algebraic Methods in Systems Biology | Lecture | Texas A&M Univ/Workshop on Contemporary Math. Challenges in the Life Scien | 2016 | College Station, TX |
Quantitative Medicine Across Scales | Lecture | University of Connecticut/InCHIP | 2016 | Storrs, CT |
Algebraic models in systems biology, International Conference on Mathematical Sciences | Lecture | University of Sharjah/ International Conference on Mathematical Sciences | 2015 | Sharjah, United Arab Emirates |
Using algebra to infer gene regulatory networks | Lecture | University of California | 2015 | Berkeley, CA |
Multiscale modeling of the innate immune to Aspergillus fumigatus in the lung | Lecture | Pennsylvania State University | 2015 | Pennsylvania, PA |
Iron metabolism | Lecture | UConn Health | 2015 | Farmington, CT |
The battle over iron: the innate immune response to Aspergillus fumigatus in the lung | Talk | International Workshop on Modeling Metabolic Health | 2015 | Cambridge, UK |
Algebraic models in systems biology | Lecture | University of Wisconsin | 2014 | Milwaukee, WI |
A systems biology approach to iron metabolism | Lecture | Worcester Polytechnic Institute | 2014 | Worcester, MA |
Steady analysis of Boolean network models through model reduction and computational algebra | Talk | European Conf. on Comp. Biol. Workshop on the Logical Modelling & Analysis | 2014 | Strasbourg, France |
Dimension reduction of large sparse networks | Talk | The Fifth International Workshop on Static Analysis and Systems Biology | 2014 | Munich, Germany |
Mitochondrial Information Transfer | Talk | National Cancer Institute Workshop on Mitochondrial Information Transfer | 2014 | NIH |
The battle for iron: A multiscale in silico model of Aspergillus fumigatus in the airway | Talk | Q-Bio Winter Meeting | 2013 | Honolulu, HI |
PlantSimLab: a simulation laboratory for plant biology | Talk | Keystone Symposia Conference on Plant Immunity: Pathways and Translation | 2013 | Big Sky, Montana |
Iron regulation in health and disease: two case studies | Lecture | Jackson Laboratory for Genomic Medicine | 2013 | Farmington, CT |
Iron regulation in health and disease: two case studies | Lecture | Jackson Laboratory | 2013 | Bar Harbor, ME |
PlantSimLab: a simulation laboratory for plant biology | Lecture | UConn Health | 2013 | Farmington, CT |
The battle for iron: a multiscale in silico model of Aspergillus fumigatus in the airway | Talk | Society for Industrial and Applied Math | 2013 | San Diego, CA |
Dynamical systems over finite fields in systems biology | Talk | Banff International Research Station | 2013 | Banff, Canada |
Algebraic geometry in systems biology | Lecture | Dept. of Mathematics and Statistics, Bowling Green State University | 2012 | Bowling Green, OH |
Patterns are everywhere: how and why | Lecture | Kids' Tech University at Bowling Green State University | 2012 | Bowling Green, OH |
Cancer Systems Biology | Lecture | Bioinformatics and Computational Biology Program | 2012 | Iowa State University |
Algebraic models in systems biology | Lecture | Department of Mathematics, Mississippi State University | 2012 | Mississippi State University, MS |
Algebraic geometry for large networks | Lecture | DARPA Summit Meeting on Mathematics | 2012 | Lake Tahoe, NV |
Algebraic models in systems biology | Lecture | Workshop on Discrete and Topological Models in Molecular Biology | 2012 | Tampa, FL |
Steady state analysis of Boolean network models via a universal class of models | Lecture | Special Session on Dynamics of Complex Networks, AMS meeting | 2012 | Washington, DC |
Wnt sigaling in melanoma cells | Lecture | Special Session on Mathematical Methods in Disease Modeling, AMS meeting | 2012 | Washington, DC |
Algebraic models in systems biology | Lecture | Dept. of Mathematics, University of Delaware | 2012 | Newark, DE |
Algebraic models in systems biology | Lecture | Department of Mathematics, University of Nebraska | 2012 | Lincoln, NE |
Algebraic methods is systems and evolutionary biology | Lecture | Mathematical Biosciences Institute | 2012 | Columbus, OH |
Iron metabolism | Lecture | Mathematical Biosciences Institute | 2012 | Columbus, OH |
Science and the fight against cancer, keynote address | Lecture | American Cancer Society, Relay for Life | 2012 | Tazewell, VA |
The role of SIAM as an advocate for the mathematical sciences community | Lecture | SIAM Annual Meeting | 2012 | Minneapolis, MN |
Downregulation of LRP6 inhibits growth of melanoma cells | Lecture | SIAM Annual Meeting | 2012 | Minneapolis, MN |
Algebraic geometry in systems biology | Lecture | Workshop on Algebraic geometry in the sciences | 2011 | University of Oslo, Norway |
Patterns are everywhere: how and why | Lecture | Kids' Tech University at Virginia Tech | 2011 | Virginia Tech |
A systems biology view of cancer | Lecture | Workshop at the Wake Forest U. School of Med. Cancer Biology Dept. | 2011 | Winston-Salem, NC |
A systems biology view of cancer | Lecture | School of Pharmacy, Xavier University | 2011 | New Orleans, LA |
A systems biology view of cancer | Lecture | School of Medicine, Marshall University | 2011 | Huntington, WV |
Cancer Systems Biology | Lecture | GBCB Seminar, Virginia Tech | 2011 | Blacksburg, VA |
Trends in Modern Mathematical Biology, keynote address | Lecture | MAA PREP Workshop on "Mathematical Biology: Beyond Calculus." | 2011 | Sweet Briar College, Sweet Briar, VA |
A mathematical framework for agent based models of complex biological networks | Lecture | MAA PREP Workshop on "Mathematical Biology: Beyond Calculus." | 2011 | Sweet Briar College, |
Trends in symbolic computation development and applications | Panel Discussion | 17th International Conference on Applications of Computer Algebra (ACA) | 2011 | Houston, TX |
Algebraic computation in bioinformatics and systems biology, plenary address | Lecture | 17th International Conference on Applications of Computer Algebra (ACA) | 2011 | Houston, TX |
The relationship between iron metabolism and breast cancer | Lecture | Roche Pharma | 2011 | Nutley, NJ |
Cancer Systems Biology | Lecture | New Mexico Center for Spatiotemporal Modeling of Cell Signaling | 2011 | University of New Mexico |
Algebraic models in systems biology | Lecture | SIAM Conference on Applied Algebraic Geometry | 2011 | Raleigh, NC |
Patterns are everywhere: how and why | Lecture | Kids' Tech University | 2011 | Virginia State University |
Algebraic computation in bioinformatics and systems biology, plenary address | Lecture | Conference on Technological Applications of Symbolic Computation | 2011 | Granada, Spain |
Mathematics and the Systems Biology of Cancer | Lecture | Soc. for the Advancement of Chicanos and Native Americans in Sci. | 2010 | Anaheim, CA |
Toward a predictive model of iron metabolism | Lecture | Marie Curie Cancer Center | 2010 | Paris, France |
Training in Cancer Systems Biology | Lecture | Annual Meeting of the Cancer Biology Training Consortium | 2010 | Tuscon, AZ |
Algebraic models in systems biology | Lecture | University of Kentucky | 2010 | University of Kentucky |
Algebraic models in systems biology | Lecture | Arizona State University | 2010 | Arizona State University |
Kids' Tech University | Lecture | Arizona State University | 2010 | Arizona State University |
A systems biology approach to iron metabolism in aging and cancer | Lecture | Conference on the Systems Biology of Human Aging | 2010 | Philadelphia,PA |
Toward a predictive model of intracellular iron homeostasis | Lecture | Glaxo-Smith-Kline | 2010 | Philadelphia |
A systems biology approach to iron metabolism and cancer | Lecture | Workshop on Nanotechnology, Proteogenomics, and Visual Analytic Application | 2010 | Abuja, Nigeria |
Nested canalyzing polynomial dynamical systems | Lecture | Special Session on Applications of Algebraic Geometry, Amer. Math. Soc. | 2010 | Joint Mathematics Meetings, San Francisco, CA |
The relationship between structure and dynamics in biological networks | Lecture | Western Michigan University | 2010 | Kalamazoo, MI |
Mathematics-aided medicine | Lecture | Cafe Scientifique | 2010 | Blacksburg, VA |
Cancer Systems Biology | Lecture | Jackson State University | 2010 | Jackson, MS |
Mathematical Biology Education: Beyond 'Calculus, Keynote Address | Lecture | Math. Assoc. Amer. Workshop on Mathematical Biology | 2010 | Sweet Briar College, Sweet Briar, VA |
Algebraic models in systems biology, Plenary Lecture | Lecture | Workshop for Young Researchers in Mathematical Biology | 2010 | Mathematical Biosciences Institute, Columbus, OH |
Mathematics and the public in the U.S.A. | Lecture | Workshop on Raising Public Awareness of Mathematics | 2010 | Obidos, Portugal |
Dynamical systems over graphs: the relationship between graph topology and dynamics | Lecture | Special Session on Applications of Topology, Amer. Mathematical Society | 2009 | Joint Mathematics Meetings, Washington, D.C. |
Introduction to Systems Biology | Lecture | Department of Cancer Biology, Wake Forest University | 2009 | Winston-Salem, NC |
Careers in computational biology | Lecture | Hampton University | 2009 | Hampton, VA |
Experience in developing collaborations with MSI (particularly HBCUs) with VBI | Lecture | Achieving Inclusive Excellence in Grant Proposals Workshop | 2009 | Virginia Tech |
Reverse-engineering in systems biology (short course) | Lecture | Instituto Gulbenkian de Ciencia | 2009 | Lisbon, Portugal |
Algebraic models in systems biology | Lecture | Mathematical Applications Seminar series | 2009 | George Washington University, Washington, D.C. |
Discrete models of gene regulation networks, Plenary address | Lecture | 15th International Conference on DNA Computing and Molecular Programming | 2009 | University of Arkansas, Fayetteville, AR |
Parameter estimation for algebraic models | Lecture | Emerging Modelling Methodologies in Medicine and Biology | 2009 | International Centre for Mathematical Sciences, Edinburgh, Scotland |
Algebraic models in systems biology | Lecture | Mathematics Department, Clemson University | 2009 | |
Biology + Math= Biology | Lecture | Oakwood University | 2009 | Huntsville, AL |
Algebraic Methods in Systems Biology, Plenary Address | Lecture | Spring Southeastern Sectional Meeting | 2009 | North Carolina State University, Raleigh, NC |
Experimental design and biochemical network inference | Lecture | Annual Meeting of the American Statistical Society | 2009 | Washington, D.C., |
The relationship between dynamics and structure of biological networks | Lecture | Allerton Conference on Communication, Control, and Computing | 2009 | Urbana-Champaign, IL |
The relationship between dynamics and structure of biological networks | Lecture | Southern Methodist University | 2009 | Dallas, TX |
Cancer systems biology | Lecture | National Conference of the Society for the Advancement of Chicanos and Nati | 2009 | Dallas, TX |
Careers in computational biology | Lecture | Norfolk State University | 2009 | Norfolk, VA |
A predictive model for the regulation of mammalian iron metabolism | Lecture | Harvard Medical School | 2009 | Boston, MA |
Design of experiments and biochemical network inference | Lecture | University of Kentucky | 2008 | Lexington, KY |
Algebraic Methods in Systems Biology | Lecture | 2008 | University of Marburg, Germany | |
Algebraic Methods in Systems Biology | Lecture | Department of Mathematics | 2008 | Georgia Tech, Atlanta, GA |
Algebraic Methods in Systems Biology | Lecture | Institut des Hautes Etudes Scientifiques | 2008 | Paris, France |
Undergraduate Research Panel | Lecture | Blackwell-Tapia Conference | 2008 | Triangle Park, NC |
Data analysis for molecular fingerprinting of breast cancer | Lecture | American Mathematical Society (AMS) Joint International Meeting | 2008 | Fudan University, Shanghai, China |
Metabolic fingerprinting of breast cancer | Lecture | Georgetown University Medical School | 2008 | Washington, DC |
An introduction to systems biology | Lecture | Statistical and Applied Mathematical Sciences Institute | 2008 | Durham, NC |
Computer Algebra Methods for the Inference of Biochemical Networks | Lecture | Department of Mathematics | 2008 | NC State University, Raleigh, NC |
The Dynamics of Conjunctive Boolean Networks, Discrete Models of Biological Networks Workshop | Lecture | Institut de Mathematiques.de Luminy | 2008 | Marseille, France |
Algebraic Models in Systems Biology | Lecture | Shanghai Jiao Tong University | 2008 | China |
Virginia Tech to launch Kid's Tech University radio spot with Timothy Martin. | Other | News/Talk 960 WFIR | 2008 | |
Parametric Inference of Biochemical Network Models | Lecture | Annual Joint Meetings of the AMS-MAA-SIAM | 2007 | New Orleans, LA. |
Parametric Inference of Biochemical Network Models, Keynote lecture | Lecture | 2nd Bioinformatics Research Symposium | 2007 | Clemson University, Clemson, SC |
Polynomial dynamical systems over finite fields, with applications to modeling and simulation of biological networks | Lecture | IMA Workshop | 2007 | University of Minnesota, Minneapolis, MN |
Biochemical network inference | Lecture | FLAD Computational Biology Collaboratorium (FCBC) | 2007 | Lisbon, Portugal |
Algebraic Methods in Systems Biology, | Lecture | Applied Mathematical Sciences Summer Institute (AMSSI) | 2007 | California State Polytechnic University, Pomona, CA |
The Role of Mathematics in Systems Biology | Lecture | Second Argentinian Summer School in Biomathematics | 2007 | Cordoba, Argentina |
Discrete Models of Biochemical Networks: The Toric Variety of Nested Canalyzing Functions. | Lecture | Research Institute for Symbolic Computation | 2007 | Linz, Austria |
A mathematical formalism for agent-based modeling | Lecture | Discrete Mathematics and Algorithms Conference | 2007 | Clemson University, Clemson, SC |
Complexity in biological systems | Lecture | Cyber-Enabled Discovery and Innovation (COl) Workshop | 2007 | Research Triangle Park, NC |
Graduate studies in computational biology | Lecture | The Institute for Math Biology Education and Research | 2007 | Appalachian State University, Boone, NC |
A Computational Algebra Approach to the Reverse-engineering of Biochemical Networks | Lecture | Chinese Academy of Sciences | 2006 | Shanghai, China |
Algebraic Models in Systems Biology | Lecture | Rutgers University | 2006 | New Brunswick, NJ |
Discrete Models in Epidemiology | Lecture | Summer School - Mathematical Modeling in Epidemiology | 2006 | San Salvador, El Salvador |
Finite Dynamical Systems | Lecture | Clemson University | 2006 | Clemson, SC |
Mathematical Methods in Computational Biology | Lecture | Annual Meeting of the Soc. for the Advancement of Native Americans and Chic | 2006 | |
A Computational Algebra Approach to Yeast Systems Biology | Lecture | Center for Genomics | 2006 | Cuernavaca, Mexico |
A Computational Algebra Approach to the Reverse Engineering of Gene Regulatory Networks | Lecture | Eastern Michigan University | 2005 | Ypsilanti, MI |
System identification of biochemical networks | Lecture | Summer School on Nanoscience and Systems Biology | 2005 | University of Munich, Germany. |
System identification of biochemical networks using discrete models | Lecture | Fourth Workshop on the Computation of Biochemical Pathways and Genetic Netw | 2005 | Heidelberg, Germany |
Algebraic Models in Systems Biology | Lecture | 1st Intl. Conference on Algebraic Biology | 2005 | Tokyo, Japan |
Algebraic Models in Systems Biology | Lecture | Academia Sinica | 2005 | Taiwan, Taipeh |
Mathematical Methods in Computational Biology | Lecture | First Argentinian Summer School in Siomathematics | 2005 | Cordoba, Argentina |
A Computational Algebra Approach to Reverse-engineering of Biochemical Networks | Lecture | IMPA | 2005 | Rio de Janeiro, Brazil |
Mathematical Models of Biochemical Networks: a case study | Lecture | Bioinformatics Colloquium | 2004 | Ludwig-Maximilians University, Munich, Germany |
Mathematics Methods in Bioinformatics | Lecture | Society for Advancement of Chicanos and Native Americans in Science | 2004 | Austin, TX |
Finite Dynamical Systems: Theory and Practice | Lecture | 16th lntl. Symposium on Mathematical theory of Networks and Systems | 2004 | Leuven, Belglum |
An Optimal Control Problem for in vitro Virus Competition | Lecture | 43rd IEEE Conference on Decision and Control | 2004 | Bahamas |
Discrete Models of Biochemical Networks | Lecture | Free University | 2004 | Amsterdam, Netherlands |
Finite Dynamical Systems: A Mathematical Foundation for Simulation Science | Lecture | Univ. Western Ontario | 2004 | Ontario, Canada |
A Computer Algebra Approach to the Modeling of Biochemical Systems, Plenary address | Lecture | International Symposium on Symbolic and Algebraic Computation | 2003 | Drexel University, Philadelphia, PA |
Open Problems in Algebraic Statistics | Lecture | American Institute for Mathematics | 2003 | Palo Alto, CA |
Mathematics in the Age of Networks | Lecture | Virginia Tech | 2003 | Blacksburg, VA |
A Mathematical Foundation for PathSim: a rule-based spatial model of immune response to viral pathogens | Lecture | Ohio State University | 2003 | Columbus, OH |
Symbolic Computation Methods in Computational Biology | Lecture | Technical University | 2003 | Munich, Germany |
Computer Simulation and Biological Systems, Plenary address | Lecture | Mathematics Conference of the Puerto Rican Math Society | 2003 | Ponce, Puerto Rico |
Reverse Engineering of Gene Regulatory Networks | Lecture | University of Munich | 2003 | Munich, Germany |
Reverse-Engineering of Biological Networks | Lecture | Virginia Tech | 2003 | Blacksburg, VA |
Modeling of Biochemical Networks | Lecture | ISSAC | 2003 | Drexel University, Philadelphia, PA |
The Need for Data to Fit Models | Lecture | NIEHS Workshop on Systems Biology | 2003 | Research Triangle Park, NC |
A Computational Algebra Approach to the Modeling of Biochemical Systems | Lecture | Univ. Buenos Aires | 2003 | Univ. Buenos Aires, Argentina |
Finite Dynamical Systems: theory and practice | Lecture | Stanford University | 2003 | Palo Alto, CA |
Computer Simulation of Immune Response to EBV Infection | Lecture | NIAID workshop | 2003 | National Institutes of Health, Bethesda, MD |
Polynomial Models of Finite Dynamical Systems | Lecture | Institute for Mathematics and its Applications | 2003 | Minneapolis, MN |
A New Combinatorial Homotopy Theory of Graphs | Lecture | University of Western Ontario | 2002 | New London,Canada |
Oh What a Tangled Web We Weave: The Age of Networks | Lecture | Biever Lecture, Loyola University | 2002 | New Orleans, LA |
Polynomial Methods for Reverse-Engineering of Biochemical Networks | Lecture | University of California | 2002 | Berkeley, CA |
Polynomial Methods in Mathematical Biology | Lecture | Virginia Tech | 2002 | Blacksburg, VA |
A Categorical Framework for Sequential Dynamical Systems | Lecture | SIAM Conf. on Discrete Mathematics | 2002 | San Diego, CA |