Photo of George M. Weinstock, Ph.D.

George M. Weinstock, Ph.D.

Director, Microbial Genomics Professor, The Jackson Laboratory for Genomic Medicine
Academic Office Location:
The Jackson Laboratory for Genomic Medicine
10 Discovery Drive
Farmington, CT 06032
Phone: 860-837-2420
Email: george.weinstock@jax.org
Website(s):

Genetics & Developmental Biology Graduate Program

Weinstock Lab Page

Education
DegreeInstitutionMajor
B.S.University of MichiganBiophysics
Ph.D.Massachusetts Institute of TechnologyGenetics and physical studies
OtherStanford University Medical SchoolBiochemistry

Post-Graduate Training
TrainingInstitutionSpecialty
Undergraduate studentTraining of undergraduate student, Fanny Chautin, 2003
Undergraduate studentTraining of undergraduate student, 1985, Adam Quarles
Undergraduate studentTraining of undergraduate student, 1992, Jennifer Reyna
Undergraduate studentTraining of undergraduate student, 1995, Jonathan Mathy
Undergraduate studentTraining of undergraduate student(s), Jeff Gralnick, Mack Kuo, Michelle Hibbard, 1996
Undergraduate studentTraining of undergraduate student(s), Patricia Jimenez, Susan Abramski, 2000
Undergraduate studentTraining of undergraduate student, Ying Xue (Zoey) Wang, 2013
Undergraduate studentTraining of undergraduate student, Alexis Beraducci, 2004 - 2005

Awards
Name of Award/HonorAwarding Organization
FellowAmerican Association for the Advancement of Science
Chancellor's Entrepreneurship and Innovation AwardUniversity of Texas
Microbiology LecturerWaksman Foundation
Special CommendationUTHHSC Graduate School of Biomedical Sciences
President, Graduate FacultyUTHHSC
Vice-President, Graduate FacultyUTHHSC
FellowAmerican Academy of Microbiology
Senior FellowHuman Genome Program
Outstanding Teacher Award [John P. McGovern]University Texas Graduate School Biomed. Sci.
Dean's Teaching Excellence ListUniversity Texas Houston Health Sciences Center
FellowBank of America Giannini Foundation
FellowJane Coffin Childs Memorial Fund for Medical Research
Name & DescriptionCategoryRoleTypeScopeStart YearEnd Year
Chair, Genomics Innovation Network, Genome CANADAOtherExternalInternational2015
Executive Committee, Advanced Characterization Laboratory of U Conn Technology ParkProfessional/Scientific OrganizationUConn-StorrsState2015
Sci. Adv. Brd. [gMIND], Gut Microbiota In Neurodegenerative DiseasesProfessional/Scientific OrganizationExternalInternational2015
Infectious Disease Drug DiscoveryProfessional/Scientific OrganizationPartnershipUniversity2015
UBC-Genome [Canadian First Research Excellence Fund]Professional/Scientific OrganizationBC AdvisorExternalInternational2015
Advisory Committee Member; JAX Genome TechnologyAdvisory CommitteeOtherState2015
Expert Advisory Panel [COMPARE (EU)]Advisory CommitteeUniversity20142015
Chair, Steering Comm., American Academy Microbiology Colloquium NGS for Pathogen DetectionProfessional/Scientific OrganizationOtherNational20142015
Oversight Committee, Science & Technology Innovative Centres, Genome CANADAProfessional/Scientific OrganizationExternalInternational20142015
NSERC [Natural Sciences and Engineering Reseach Council of CANADA] Discovery Frontiers: Advancing Big Data Science in Genomics Research PanelProfessional/Scientific OrganizationExternalInternational2014
Advisory Group Member; JAX ITAdvisory CommitteeOtherState20142015
Sequenching Operations Member; JAX Innovation CouncilEducation CommitteeOtherState20142015
Pre/Postdoc committee memberEducation CommitteeOtherState20142015
Research Club Faculty Organizer; JGM GenomicsResearch CommitteeOtherState20142015
Committee Member; JAX mouse facility for pathogen researchResearch CommitteeOtherState20142015
Executive Committee Member, JGMEducation CommitteeOtherState20142015
Research Grant Committee Member; JAXResearch CommitteeOtherState20142015
JAX SAC and SAC-FACAdvisory CommitteeOtherState20142015
Search Committee Member; JAX-U. Conn. Computational biology faculty positionProfessional/Scientific OrganizationOtherState20142015
Search Committee Member; JAX-U. Conn. Statistical genetics faculty positionProfessional/Scientific OrganizationOtherState20142015
Search Committee Member; JAX-U. Conn. Microbiome Faculty positionProfessional/Scientific OrganizationOtherState20142015
Search Committee U. Conn. microbiome faculty positionProfessional/Scientific OrganizationUConn HealthUniversity20142015
Advisory Panel Member [Vervet Research Colony]; Wake Forest University Primate CenterAdvisory CommitteeOtherUniversity20132014
Advisory Board Member; Scientific OpGenAdvisory CommitteeMemberExternalNational20132014
Advisory Board; Scientific Real Time Genomics, New ZealandAdvisory CommitteeMemberExternalInternational20132014
Identifier; Global Microbial Task ForceProfessional/Scientific OrganizationMemberExternalInternational20132014
Inspiration Mars Personalized Medicine Team NSERC Discovery Frontiers: Advancing Big Data Science in Genomics Research Panel, Ottawa, CANADAProfessional/Scientific OrganizationMemberExternalInternational20132014
Task Force Member; Genome CANADA Disruptive TechnologyProfessional/Scientific OrganizationMemberExternalInternational20122013
Sci. Adv. Board EU METACARDIS projectProfessional/Scientific OrganizationMemberExternalInternational20122015
Next-generation sequencing workshop, Genentech, SFO, CAWorkshop/ConferenceMemberExternalNational2012
Scientific Advisory Board, Program for Health, Philippine Genome Center, University of the PhilippinesProfessional/Scientific OrganizationMemberExternalInternational20112015
Committee on Elections, American Academy of MicrobiologyProfessional/Scientific OrganizationChairExternalNational20112014
WHO Grand Challenges in Genomics for Public Health in Developing Countries, Expert PanelProfessional/Scientific OrganizationMemberExternalInternational2011
Genome Canada SIAC Bioinformatics Working GroupProfessional/Scientific OrganizationMemberExternalInternational20112012
White House briefing on Microbial ForensicsProfessional/Scientific OrganizationMemberExternalNational2011
NIH Workshop on Future of Human Microbiome Research, Bethesda, MDProfessional/Scientific OrganizationMemberExternalNational2011
Encyclopedia of GeneticsProfessional/Scientific OrganizationGenomics Section EditorExternalNational20102013
NHLBI Lung Human Microbiome Project Sequencing Committee, Bethesda, MDProfessional/Scientific OrganizationChairExternalNational20102011
NHLBI Lung Human Microbiome Project Publications Committee, Bethesda, MDProfessional/Scientific OrganizationChairExternalNational20102011
Board of Directors, Genome Canada; Program CommitteeProfessional/Scientific OrganizationChairmanExternalInternational20102015
Scientific Advisory Board, Michael Smith Genome Sciences Centre, Vancouver, CANADAProfessional/Scientific OrganizationMemberExternalInternational20102015
NHLBI Lung Human Microbiome Project Steering Committee, Bethesda, MDProfessional/Scientific OrganizationCo-ChairExternalNational20102015
Editorial Board, Genome Biology and EvolutionEditorial BoardMemberExternalNational20092013
Editorial Board, BMC-GenomicsEditorial BoardMemberExternalNational20052015
Editorial Board, Genome ResearchEditorial BoardMemberExternalNational20052015
Maize Genome Project External Advisory CommitteeAdvisory CommitteeChairExternalInternational20052008
Advisory Board, Genome BiologyAdvisory CommitteeMemberExternalNational20042015
Editorial Board, PlasmidEditorial BoardMemberExternalNational20022008
Journal of BacteriologyEditorial BoardMemberExternalNational19982004
National Center for Human Genome Research, National Institute of HealthStudy SectionMemberExternalNational1996
American Society for Microbiology, Microbial Genomics CommitteeProfessional/Scientific OrganizationMemberExternalNational1991
Scientific Advisory Board, Center for Comparative Animal Genetics, Institute for Biosciences, Texas A&M University, College Station, TXAdvisory CommitteeMemberExternalNational19891991
DNA and Cell BiologySenior EditorExternalNational19872006
Search Committee for Chairman of Genetics Department, M.D. Anderson Cancer Center, Houston, TXOtherMemberExternalNational1985
JAX Scholars Selection Committee MemberEducation CommitteeOtherState2014
American Academy of Microbiology (AAM)Professional/Scientific OrganizationMemberExternalNational
American Association for the Advancement of Science (AAAS)Professional/Scientific OrganizationMemberExternalNational
American Society for Biochemistry and Molecular Biology (ASBMB)Professional/Scientific OrganizationMemberExternalNational
American Society of Human Genetics (ASHG)Professional/Scientific OrganizationMemberExternalNational
American Society for Microbiology (ASM)Professional/Scientific OrganizationMemberExternalNational
Association for Computing Machinery (ACM)Professional/Scientific OrganizationMemberExternalNational
Federation of American Scientists (FAS)Professional/Scientific OrganizationExternalNational
Genetics Society of America (GSA)Professional/Scientific OrganizationExternalNational
Human Genome Organization International (HUGO)Professional/Scientific OrganizationMemberExternalInternational
Sigma XiOtherMemberNational
Current Opinion in Microbiology, volume 13, issue 5, Genomics sectionProfessional/Scientific OrganizationGuest EditorExternalNational2010
Guest Editor, Research in Microbiology, volume 151, Genomics issueEditorial BoardMemberExternalNational2000
American Society for Human Genetics Annual Meeting, session organizer (Baltimore)Professional/Scientific OrganizationMemberExternalNational2015
American Academy of Microbiology NGS Diagnostics WorkshopWorkshop/ConferenceMemberExternalNational2015
International Human Microbiome Consortium Conference (Luxembourg)Workshop/ConferenceMemberExternalInternational2015
Jackson Laboratory for Genomic Medicine Grand Opening Scientific SymposiumProfessional/Scientific OrganizationMemberExternalNational2014
Microbial Genomics Conference (Institut Pasteur)Workshop/ConferenceMemberExternalInternational2014
International Human Microbiome Consortium Conference (Hangzhou)Workshop/ConferenceMemberExternalInternational2013
Infectious Disease Genomics and Global Health (Sanger Institute, UK)Professional/Scientific OrganizationMemberExternalInternational2013
Infectious Disease Genomics and Global Health (Sanger Institute, UK) [not a duplicate] attended 2013 and 2012Professional/Scientific OrganizationMemberExternalInternational2012
Global Health Genomics (CSH-Asia, Suzhou, China)Professional/Scientific OrganizationMemberExternalInternational2012
International Human Microbiome Consortium Conference (Paris)Workshop/ConferenceMemberExternalInternational2012
Genome Canada Bioinformatics/Computational Biology Workshop (Toronto)Workshop/ConferenceMemberExternalInternational2011
State-of-the-Art Technology Colloquium, ASM Annual Meeting (New Orleans)Professional/Scientific OrganizationMemberExternalNational2011
International Human Microbiome Consortium Conference (Vancouver)Workshop/ConferenceMemberExternalInternational2011
Human Microbiome Conference (St. Louis)Workshop/ConferenceMemberExternalNational2010
Infectious Disease Genomics and Global Health (Sanger Institute, UK)Professional/Scientific OrganizationMemberExternalInternational2010
Institute of Electrical and Electronics Engineers (IEEE)OtherMemberExternalInternational

Accepting students for Lab Rotations: Summer '17, Fall '17, Spring '18

Journal Articles

  • Ancient hybridization and strong adaptation to viruses across African vervet monkey populations.
    Svardal, Hannes; Jasinska, Anna J; Apetrei, Cristian; Coppola, Giovanni; Huang, Yu; Schmitt, Christopher A; Jacquelin, Beatrice; Ramensky, Vasily; Müller-Trutwin, Michaela; Antonio, Martin; Weinstock, George; Grobler, J Paul; Dewar, Ken; Wilson, Richard K; Turner, Trudy R; Warren, Wesley C; Freimer, Nelson B; Nordborg, Magnus Nature genetics 2017 Oct;
  • Genetic variation and gene expression across multiple tissues and developmental stages in a nonhuman primate.
    Jasinska, Anna J; Zelaya, Ivette; Service, Susan K; Peterson, Christine B; Cantor, Rita M; Choi, Oi-Wa; DeYoung, Joseph; Eskin, Eleazar; Fairbanks, Lynn A; Fears, Scott; Furterer, Allison E; Huang, Yu S; Ramensky, Vasily; Schmitt, Christopher A; Svardal, Hannes; Jorgensen, Matthew J; Kaplan, Jay R; Villar, Diego; Aken, Bronwen L; Flicek, Paul; Nag, Rishi; Wong, Emily S; Blangero, John; Dyer, Thomas D; Bogomolov, Marina; Benjamini, Yoav; Weinstock, George M; Dewar, Ken; Sabatti, Chiara; Wilson, Richard K; Jentsch, J David; Warren, Wesley; Coppola, Giovanni; Woods, Roger P; Freimer, Nelson B Nature genetics 2017 Oct;
  • Rapid replacement by non-vaccine pneumococcal serotypes may mitigate the impact of the pneumococcal conjugate vaccine on nasopharyngeal bacterial ecology.
    Kwambana-Adams, Brenda; Hanson, Blake; Worwui, Archibald; Agbla, Schadrac; Foster-Nyarko, Ebenezer; Ceesay, Fatima; Ebruke, Chinelo; Egere, Uzochukwu; Zhou, Yanjiao; Ndukum, Maze; Sodergren, Erica; Barer, Michael; Adegbola, Richard; Weinstock, George; Antonio, Martin Scientific reports 2017 Aug;7(1):8127
  • Community characteristics of the gut microbiomes of competitive cyclists.
    Petersen, Lauren M; Bautista, Eddy J; Nguyen, Hoan; Hanson, Blake M; Chen, Lei; Lek, Sai H; Sodergren, Erica; Weinstock, George M Microbiome 2017 Aug;5(1):98
  • Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
    Bowers, Robert M; Kyrpides, Nikos C; Stepanauskas, Ramunas; Harmon-Smith, Miranda; Doud, Devin; Reddy, T B K; Schulz, Frederik; Jarett, Jessica; Rivers, Adam R; Eloe-Fadrosh, Emiley A; Tringe, Susannah G; Ivanova, Natalia N; Copeland, Alex; Clum, Alicia; Becraft, Eric D; Malmstrom, Rex R; Birren, Bruce; Podar, Mircea; Bork, Peer; Weinstock, George M; Garrity, George M; Dodsworth, Jeremy A; Yooseph, Shibu; Sutton, Granger; Glöckner, Frank O; Gilbert, Jack A; Nelson, William C; Hallam, Steven J; Jungbluth, Sean P; Ettema, Thijs J G; Tighe, Scott; Konstantinidis, Konstantinos T; Liu, Wen-Tso; Baker, Brett J; Rattei, Thomas; Eisen, Jonathan A; Hedlund, Brian; McMahon, Katherine D; Fierer, Noah; Knight, Rob; Finn, Rob; Cochrane, Guy; Karsch-Mizrachi, Ilene; Tyson, Gene W; Rinke, Christian; Genome Standards Consortium; Lapidus, Alla; Meyer, Folker; Yilmaz, Pelin; Parks, Donovan H; Eren, A M; Schriml, Lynn; Banfield, Jillian F; Hugenholtz, Philip; Woyke, Tanja Nature biotechnology 2017 Aug;35(8):725-731
  • Molecular Epidemiology and Phylogenomics of Staphylococcus aureus Bacteremia in Latin-America: A Prospective Cohort Multicenter Study in Nine Countries.
    Arias, Cesar A; Reyes, Jinnethe; Carvajal, Lina Paola; Rincon, Sandra; Diaz, Lorena; Panesso, Diana; Ibarra, Gabriel; Rios, Rafael; Munita, Jose M; Salles, Mauro J; Alvarez-Moreno, Carlos; Labarca, Jaime; Garcia, Coralith; Luna, Carlos M; Mejia-Villatoro, Carlos; Zurita, Jeannete; Guzman-Blanco, Manuel; Rodriguez-Noriega, Eduardo; Narechania, Apurva; Rojas, Laura J; Planet, Paul J; Weinstock, George M; Gotuzzo, Eduardo; Seas, Carlos Antimicrobial agents and chemotherapy 2017 Jul;
  • A prospective microbiome-wide association study of food sensitization and food allergy in early childhood.
    Savage, Jessica H; Lee-Sarwar, Kathleen A; Sordillo, Joanne; Bunyavanich, Supinda; Zhou, Yanjiao; O'Connor, George; Sandel, Megan; Bacharier, Leonard; Zeiger, Robert; Sodergren, Erica; Weinstock, George M; Gold, Diane R; Weiss, Scott T; Litonjua, Augusto A Allergy 2017 Jun;
  • Validation of Metagenomic Next-Generation Sequencing Tests for Universal Pathogen Detection.
    Schlaberg, Robert; Chiu, Charles Y; Miller, Steve; Procop, Gary W; Weinstock, George; Professional Practice Committee and Committee on Laboratory Practices of the American Society for Microbiology; Microbiology Resource Committee of the College of American Pathologists Archives of pathology & laboratory medicine 2017 Jun;141(6):776-786
  • Ceftaroline-Resistant, Daptomycin-Tolerant, and Heterogeneous Vancomycin-Intermediate Methicillin-Resistant Staphylococcus aureus Causing Infective Endocarditis.
    Nigo, Masayuki; Diaz, Lorena; Carvajal, Lina P; Tran, Truc T; Rios, Rafael; Panesso, Diana; Garavito, Juan D; Miller, William R; Wanger, Audrey; Weinstock, George; Munita, Jose M; Arias, Cesar A; Chambers, Henry F Antimicrobial agents and chemotherapy 2017 Mar;61(3):
  • Isolation of Methicillin-resistant Staphylococcus aureus and Multidrug-resistant Elizabethkingia meningoseptica From Neonates Within Minutes of Birth.
    Kwambana-Adams, Brenda A; Laxton, Claire S; Foster-Nyarko, Ebenezer; Laxton, Claire S; Weinstock, George; Antonio, Martin The Pediatric infectious disease journal 2017 Jan;36(1):123-124
  • Factors Influencing the Infant Gut Microbiome at Age 3-6 months: Findings from the ethnically diverse Vitamin D Antenatal Asthma Reduction Trial (VDAART).
    Sordillo, Joanne E; Zhou, Yanjiao; McGeachie, Michael J; Ziniti, John; Lange, Nancy; Laranjo, Nancy; Savage, Jessica R; Carey, Vincent; O'Connor, George; Sandel, Megan; Strunk, Robert; Bacharier, Leonard; Zeiger, Robert; Weiss, Scott T; Weinstock, George; Gold, Diane R; Litonjua, Augusto A The Journal of allergy and clinical immunology 2016 Oct;
  • Symbiotic Burkholderia species show diverse arrangements of nif/fix and nod genes, and lack typical high affinity cytochrome cbb3 oxidase genes.
    De Meyer, Sofie Elisabeth; Briscoe, Leah; Martinez-Hidalgo, Pilar; Agapakis, Christina; Estrada de Los Santos, Paulina; Seshadri, Rekha; Reeve, Wayne; Weinstock, George; O'Hara, Graham; Howieson, John; Hirsch, Ann M Molecular plant-microbe interactions : MPMI 2016 Jun;
  • Characterization of the bacterial and fungal microbiome in indoor dust and outdoor air samples: a pilot study.
    Hanson, Blake; Zhou, Yanjiao; Bautista, Eddy J; Urch, Bruce; Speck, Mary; Silverman, Frances; Muilenberg, Michael; Phipatanakul, Wanda; Weinstock, George; Sodergren, Erica; Gold, Diane R; Sordillo, Joanne E Environmental science. Processes & impacts 2016 May;
  • Effects of walnut consumption on colon carcinogenesis and microbial community structure.
    Nakanishi, Masako; Chen, Yanfei; Qendro, Veneta; Miyamoto, Shingo; Weinstock, Erica; Weinstock, George M; Rosenberg, Daniel W Cancer prevention research (Philadelphia, Pa.) 2016 May;
  • Role of Clinicogenomics in Infectious Disease Diagnostics and Public Health Microbiology.
    Westblade, Lars F; van Belkum, Alex; Grundhoff, Adam; Weinstock, George M; Pamer, Eric G; Pallen, Mark J; Dunne, Wm Michael Journal of clinical microbiology 2016 Feb;
  • R2d2 Drives Selfish Sweeps in the House Mouse.
    Didion, John P; Morgan, Andrew P; Yadgary, Liran; Bell, Timothy A; McMullan, Rachel C; Ortiz de Solorzano, Lydia; Britton-Davidian, Janice; Bult, Carol J; Campbell, Karl J; Castiglia, Riccardo; Ching, Yung-Hao; Chunco, Amanda J; Crowley, James J; Chesler, Elissa J; Förster, Daniel W; French, John E; Gabriel, Sofia I; Gatti, Daniel M; Garland, Theodore; Giagia-Athanasopoulou, Eva B; Giménez, Mabel D; Grize, Sofia A; Gündüz, Islam; Holmes, Andrew; Hauffe, Heidi C; Herman, Jeremy S; Holt, James M; Hua, Kunjie; Jolley, Wesley J; Lindholm, Anna K; López-Fuster, María J; Mitsainas, George; da Luz Mathias, Maria; McMillan, Leonard; Ramalhinho, Maria da Graça Morgado; Rehermann, Barbara; Rosshart, Stephan P; Searle, Jeremy B; Shiao, Meng-Shin; Solano, Emanuela; Svenson, Karen L; Thomas-Laemont, Patricia; Threadgill, David W; Ventura, Jacint; Weinstock, George M; Pomp, Daniel; Churchill, Gary A; Pardo-Manuel de Villena, Fernando Molecular biology and evolution 2016 Feb;
  • Effect of Advanced HIV Infection on the Respiratory Microbiome.
    Twigg Iii, Homer L; Knox, Kenneth S; Zhou, Jin; Crothers, Kristina A; Nelson, David E; Toh, Evelyn; Day, Richard B; Lin, Huaiying; Gao, Xiang; Dong, Qunfeng; Mi, Deming; Katz, Barry P; Sodergren, Erica; Weinstock, George M American journal of respiratory and critical care medicine 2016 Feb;
  • Household air pollution and the lung microbiome of healthy adults in Malawi: a cross-sectional study.
    Rylance, Jamie; Kankwatira, Anstead; Nelson, David E; Toh, Evelyn; Day, Richard B; Lin, Huaiying; Gao, Xiang; Dong, Qunfeng; Sodergren, Erica; Weinstock, George M; Heyderman, Robert S; Twigg, Homer L; Gordon, Stephen B BMC microbiology 2016 Jan;16(1):182
  • Identification of a Novel Gene on 10q22.1 Causing Autosomal Dominant Retinitis Pigmentosa (adRP).
    Daiger, Stephen P; Sullivan, Lori S; Bowne, Sara J; Koboldt, Daniel C; Blanton, Susan H; Wheaton, Dianna K; Avery, Cheryl E; Cadena, Elizabeth D; Koenekoop, Robert K; Fulton, Robert S; Wilson, Richard K; Weinstock, George M; Lewis, Richard A; Birch, David G Advances in experimental medicine and biology 2016 Jan;854193-200
  • Longitudinal Prediction of the Infant Gut Microbiome with Dynamic Bayesian Networks.
    McGeachie, Michael J; Sordillo, Joanne E; Gibson, Travis; Weinstock, George M; Liu, Yang-Yu; Gold, Diane R; Weiss, Scott T; Litonjua, Augusto Scientific reports 2016 Jan;620359
  • The real cost of sequencing: scaling computation to keep pace with data generation.
    Muir, Paul; Li, Shantao; Lou, Shaoke; Wang, Daifeng; Spakowicz, Daniel J; Salichos, Leonidas; Zhang, Jing; Weinstock, George M; Isaacs, Farren; Rozowsky, Joel; Gerstein, Mark Genome biology 2016 Jan;17(1):53
  • Parallel Epidemics of Community-Associated Methicillin-Resistant Staphylococcus aureus USA300 Infection in North and South America.
    Planet, Paul J; Diaz, Lorena; Kolokotronis, Sergios-Orestis; Narechania, Apurva; Reyes, Jinnethe; Xing, Galen; Rincon, Sandra; Smith, Hannah; Panesso, Diana; Ryan, Chanelle; Smith, Dylan P; Guzman, Manuel; Zurita, Jeannete; Sebra, Robert; Deikus, Gintaras; Nolan, Rathel L; Tenover, Fred C; Weinstock, George M; Robinson, D Ashley; Arias, Cesar A The Journal of infectious diseases 2015 Dec;212(12):1874-82
  • The genome of the vervet (Chlorocebus aethiops sabaeus).
    Warren, Wesley C; Jasinska, Anna J; García-Pérez, Raquel; Svardal, Hannes; Tomlinson, Chad; Rocchi, Mariano; Archidiacono, Nicoletta; Capozzi, Oronzo; Minx, Patrick; Montague, Michael J; Kyung, Kim; Hillier, LaDeana W; Kremitzki, Milinn; Graves, Tina; Chiang, Colby; Hughes, Jennifer; Tran, Nam; Huang, Yu; Ramensky, Vasily; Choi, Oi-Wa; Jung, Yoon J; Schmitt, Christopher A; Juretic, Nikoleta; Wasserscheid, Jessica; Turner, Trudy R; Wiseman, Roger W; Tuscher, Jennifer J; Karl, Julie A; Schmitz, Jörn E; Zahn, Roland; O'Connor, David H; Redmond, Eugene; Nisbett, Alex; Jacquelin, Béatrice; Müller-Trutwin, Michaela C; Brenchley, Jason M; Dione, Michel; Antonio, Martin; Schroth, Gary P; Kaplan, Jay R; Jorgensen, Matthew J; Thomas, Gregg W C; Hahn, Matthew W; Raney, Brian J; Aken, Bronwen; Nag, Rishi; Schmitz, Juergen; Churakov, Gennady; Noll, Angela; Stanyon, Roscoe; Webb, David; Thibaud-Nissen, Francoise; Nordborg, Magnus; Marques-Bonet, Tomas; Dewar, Ken; Weinstock, George M; Wilson, Richard K; Freimer, Nelson B Genome research 2015 Dec;25(12):1921-33
  • A Glimpse of Microbial Power in Preventive Medicine.
    Weinstock, George M JAMA pediatrics 2015 Nov;1-2
  • Discriminatory Indices of Typing Methods for Epidemiologic Analysis of Contemporary Staphylococcus aureus Strains.
    Rodriguez, Marcela; Hogan, Patrick G; Satola, Sarah W; Crispell, Emily; Wylie, Todd; Gao, Hongyu; Sodergren, Erica; Weinstock, George M; Burnham, Carey-Ann D; Fritz, Stephanie A Medicine 2015 Sep;94(37):e1534
  • Multi-center Comparison of Lung and Oral Microbiomes of HIV-infected and HIV-uninfected Individuals.
    Beck, James M; Schloss, Patrick D; Venkataraman, Arvind; Twigg Iii, Homer; Jablonski, Kathleen A; Bushman, Frederic D; Campbell, Thomas B; Charlson, Emily S; Collman, Ronald G; Crothers, Kristina; Curtis, Jeffrey L; Drews, Kimberly L; Flores, Sonia C; Fontenot, Andrew P; Foulkes, Mary A; Frank, Ian; Ghedin, Elodie; Huang, Laurence; Lynch, Susan V; Morris, Alison; Palmer, Brent E; Schmidt, Thomas M; Sodergren, Erica; Weinstock, George M; Young, Vincent B American journal of respiratory and critical care medicine 2015 Aug;
  • Identification of functional variants for cleft lip with or without cleft palate in or near PAX7, FGFR2, and NOG by targeted sequencing of GWAS loci.
    Leslie, Elizabeth J; Taub, Margaret A; Liu, Huan; Steinberg, Karyn Meltz; Koboldt, Daniel C; Zhang, Qunyuan; Carlson, Jenna C; Hetmanski, Jacqueline B; Wang, Hang; Larson, David E; Fulton, Robert S; Kousa, Youssef A; Fakhouri, Walid D; Naji, Ali; Ruczinski, Ingo; Begum, Ferdouse; Parker, Margaret M; Busch, Tamara; Standley, Jennifer; Rigdon, Jennifer; Hecht, Jacqueline T; Scott, Alan F; Wehby, George L; Christensen, Kaare; Czeizel, Andrew E; Deleyiannis, Frederic W-B; Schutte, Brian C; Wilson, Richard K; Cornell, Robert A; Lidral, Andrew C; Weinstock, George M; Beaty, Terri H; Marazita, Mary L; Murray, Jeffrey C American journal of human genetics 2015 Feb;96(3):397-411
  • A multi-megabase copy number gain causes maternal transmission ratio distortion on mouse chromosome 2.
    Didion, John P; Morgan, Andrew P; Clayshulte, Amelia M-F; Mcmullan, Rachel C; Yadgary, Liran; Petkov, Petko M; Bell, Timothy A; Gatti, Daniel M; Crowley, James J; Hua, Kunjie; Aylor, David L; Bai, Ling; Calaway, Mark; Chesler, Elissa J; French, John E; Geiger, Thomas R; Gooch, Terry J; Garland, Theodore; Harrill, Alison H; Hunter, Kent; McMillan, Leonard; Holt, Matt; Miller, Darla R; O'Brien, Deborah A; Paigen, Kenneth; Pan, Wenqi; Rowe, Lucy B; Shaw, Ginger D; Simecek, Petr; Sullivan, Patrick F; Svenson, Karen L; Weinstock, George M; Threadgill, David W; Pomp, Daniel; Churchill, Gary A; Pardo-Manuel de Villena, Fernando PLoS genetics 2015 Feb;11(2):e1004850
  • Selection of models for the analysis of risk-factor trees: leveraging biological knowledge to mine large sets of risk factors with application to microbiome data.
    Zhang, Qunyuan; Abel, Haley; Wells, Alan; Lenzini, Petra; Gomez, Felicia; Province, Michael A; Templeton, Alan A; Weinstock, George M; Salzman, Nita H; Borecki, Ingrid B Bioinformatics (Oxford, England) 2015 Jan;31(10):1607-13
  • Dynamic changes in the subgingival microbiome and their potential for diagnosis and prognosis of periodontitis.
    Shi, Baochen; Chang, Michaela; Martin, John; Mitreva, Makedonka; Lux, Renate; Klokkevold, Perry; Sodergren, Erica; Weinstock, George M; Haake, Susan K; Li, Huiying mBio 2015 Jan;6(1):e01926-14
  • Longitudinal analysis of the premature infant intestinal microbiome prior to necrotizing enterocolitis: a case-control study.
    Zhou, Yanjiao; Shan, Gururaj; Sodergren, Erica; Weinstock, George; Walker, W Allan; Gregory, Katherine E PloS one 2015 Jan;10(3):e0118632
  • Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment.
    Nobel, Yael R; Cox, Laura M; Kirigin, Francis F; Bokulich, Nicholas A; Yamanishi, Shingo; Teitler, Isabel; Chung, Jennifer; Sohn, Jiho; Barber, Cecily M; Goldfarb, David S; Raju, Kartik; Abubucker, Sahar; Zhou, Yanjiao; Ruiz, Victoria E; Li, Huilin; Mitreva, Makedonka; Alekseyenko, Alexander V; Weinstock, George M; Sodergren, Erica; Blaser, Martin J Nature communications 2015 Jan;67486
  • Sequencing strategies and characterization of 721 vervet monkey genomes for future genetic analyses of medically relevant traits.
    Huang, Yu S; Ramensky, Vasily; Service, Susan K; Jasinska, Anna J; Jung, Yoon; Choi, Oi-Wa; Cantor, Rita M; Juretic, Nikoleta; Wasserscheid, Jessica; Kaplan, Jay R; Jorgensen, Matthew J; Dyer, Thomas D; Dewar, Ken; Blangero, John; Wilson, Richard K; Warren, Wesley; Weinstock, George M; Freimer, Nelson B BMC biology 2015 Jan;1341
  • Small bowel resection induces long-term changes in the enteric microbiota of mice.
    Sommovilla, J; Zhou, Y; Sun, R C; Choi, P M; Diaz-Miron, J; Shaikh, N; Sodergren, E; Warner, B B; Weinstock, G M; Tarr, P I; Warner, B W Journal of gastrointestinal surgery : official journal of the Society for Surgery of the Alimentary Tract 2015 Jan;19(1):56-64; discussion 64
  • The transcriptional profile of coronary arteritis in Kawasaki disease.
    Rowley, Anne H; Wylie, Kristine M; Kim, Kwang-Youn A; Pink, Adam J; Yang, Amy; Reindel, Rebecca; Baker, Susan C; Shulman, Stanford T; Orenstein, Jan M; Lingen, Mark W; Weinstock, George M; Wylie, Todd N BMC genomics 2015 Jan;16(1):1076
  • HCoDES reveals chromosomal DNA end structures with single-nucleotide resolution.
    Dorsett, Yair; Zhou, Yanjiao; Tubbs, Anthony T; Chen, Bo-Ruei; Purman, Caitlin; Lee, Baeck-Seung; George, Rosmy; Bredemeyer, Andrea L; Zhao, Jiang-Yang; Sodergen, Erica; Weinstock, George M; Han, Nathan D; Reyes, Alejandro; Oltz, Eugene M; Dorsett, Dale; Misulovin, Ziva; Payton, Jacqueline E; Sleckman, Barry P Molecular cell 2014 Dec;56(6):808-18
  • High-resolution genetic mapping in the diversity outbred mouse population identifies Apobec1 as a candidate gene for atherosclerosis.
    Smallwood, Tangi L; Gatti, Daniel M; Quizon, Pamela; Weinstock, George M; Jung, Kuo-Chen; Zhao, Liyang; Hua, Kunjie; Pomp, Daniel; Bennett, Brian J G3 (Bethesda, Md.) 2014 Dec;4(12):2353-63
  • Phenotypic and genotypic analysis of Clostridium difficile isolates: a single-center study.
    Zhou, Yanjiao; Burnham, Carey-Ann D; Hink, Tiffany; Chen, Lei; Shaikh, Nurmohammad; Wollam, Aye; Sodergren, Erica; Weinstock, George M; Tarr, Phillip I; Dubberke, Erik R Journal of clinical microbiology 2014 Dec;52(12):4260-6
  • A dominant mutation in hexokinase 1 (HK1) causes retinitis pigmentosa.
    Sullivan, Lori S; Koboldt, Daniel C; Bowne, Sara J; Lang, Steven; Blanton, Susan H; Cadena, Elizabeth; Avery, Cheryl E; Lewis, Richard A; Webb-Jones, Kaylie; Wheaton, Dianna H; Birch, David G; Coussa, Razck; Ren, Huanan; Lopez, Irma; Chakarova, Christina; Koenekoop, Robert K; Garcia, Charles A; Fulton, Robert S; Wilson, Richard K; Weinstock, George M; Daiger, Stephen P Investigative ophthalmology & visual science 2014 Nov;55(11):7147-58
  • Whole genome sequence of the Treponema pallidum subsp. endemicum strain Bosnia A: the genome is related to yaws treponemes but contains few loci similar to syphilis treponemes.
    Staudová, Barbora; Strouhal, Michal; Zobaníková, Marie; Cejková, Darina; Fulton, Lucinda L; Chen, Lei; Giacani, Lorenzo; Centurion-Lara, Arturo; Bruisten, Sylvia M; Sodergren, Erica; Weinstock, George M; Smajs, David PLoS neglected tropical diseases 2014 Nov;8(11):e3261
  • The Integrative Human Microbiome Project: dynamic analysis of microbiome-host omics profiles during periods of human health and disease.
    Proctor, Lita M; Sechi, Salvatore; DiGiacomo, Nicholas D; Fettweis, Jennifer M; Jefferson, Kimberly K; Strauss, Jerome F; Rubens, Craig E; Brooks, J Paul; Girerd, Phillipe P; Huang, Bernice; Serrano, Myrna G; Sheth, Nihar U; Vivadelli, Stephany C; Asmussen, Niels C; Borzelleca, Joseph F; Bradley, Steven P; Brooks, Jamie L; Chalfant, Charles E; Dickinson, Molly R; Drake, Jennifer I; Edwards, David J; El Khoury, Joseph; Glascock, Abigail L; Gravett, Michael G; Hendricks-Muñoz, Karen D; Koparde, Vishal N; Lanni, Susan M; Lara, Ana M; Lee, Vladimir; Matveyev, Andrey V; Ozaki, Luiz V; Sexton, Amber S; Shyu, Conrad; Tran, Ann; Uetz, Peter H; Wijesinghe, Dayanjan S; Wijesooriya, Niran R; Xu, Jie; Buck, Gregory A; Huttenhower, Curtis; Gevers, Dirk; Sirota-Madi, Alexandra; Bayer, Keith; Braun, Jonathan; Denson, Lee A; Jansson, Janet K; Knight, Rob; Kugathasan, Subra; McGovern, Dermot P B; Petrosino, Joseph F; Stappenbeck, Thaddeus S; Birren, Bruce W; Clish, Clary B; Gonzalez, Antonio; Graeber, Thomas G; Lake, Kathleen; Li, Xiaoxiao; Loo, Joseph; McDonald, Daniel; Nicol, Rob; Nusbaum, Chad; Prasad, Mahadev; Ryu, Stacy; Sauk, Jenny; Schwager, Randall; Sturgeon, Holly; Tas, Neslihan; VanDussen, Kelli L; Wilson, Robin G; Yassour, Moran; Xavier, Ramnik J; Weinstock, George; McLaughlin, Tracey; Bernstein, Jonathan A; Zhou, Wenyu; Piening, Brian D; Kukurba, Kimberly; Allister, Candice; Butte, Atul J; Boyle, Sean M; Cao, Lulu; Chen, Rui; Contrepois, Kevin; Cooper, Breanna; Craig, Colleen; Datta, Somalee; Fan-Minogue, Hua; Gu, Gucci J; Hanson, Blake; Jiang, Lihua; Lek, Sai; Leopold, Benjamin; Leopold, Shana; Li-Pook-Than, Jennifer; Mitra, Siddhartha; Rego, Shannon; Sailani, M Reza; Salins, Denis; Sodergren, Erica; Soto Pérez, Paola; Takahashi, Shinichi; Snyder, Michael P; White, Owen; Mahurkar, Anup; Gwinn Giglio, Michelle Cell host & microbe 2014 Sep;16(3):276-89
  • CcpA is important for growth and virulence of Enterococcus faecium.
    Somarajan, Sudha R; Roh, Jung H; Singh, Kavindra V; Weinstock, George M; Murray, Barbara E Infection and immunity 2014 Sep;82(9):3580-7
  • Characterization of mutations in the PAS domain of the EvgS sensor kinase selected by laboratory evolution for acid resistance in Escherichia coli.
    Johnson, Matthew D; Bell, James; Clarke, Kim; Chandler, Rachel; Pathak, Prachi; Xia, Yandong; Marshall, Robert L; Weinstock, George M; Loman, Nicholas J; Winn, Peter J; Lund, Peter A Molecular microbiology 2014 Sep;93(5):911-27
  • Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages.
    Deng, Xiangyu; Desai, Prerak T; den Bakker, Henk C; Mikoleit, Matthew; Tolar, Beth; Trees, Eija; Hendriksen, Rene S; Frye, Jonathan G; Porwollik, Steffen; Weimer, Bart C; Wiedmann, Martin; Weinstock, George M; Fields, Patricia I; McClelland, Michael Emerging infectious diseases 2014 Sep;20(9):1481-9
  • Patterned progression of bacterial populations in the premature infant gut.
    La Rosa, Patricio S; Warner, Barbara B; Zhou, Yanjiao; Weinstock, George M; Sodergren, Erica; Hall-Moore, Carla M; Stevens, Harold J; Bennett, William E; Shaikh, Nurmohammad; Linneman, Laura A; Hoffmann, Julie A; Hamvas, Aaron; Deych, Elena; Shands, Berkley A; Shannon, William D; Tarr, Phillip I Proceedings of the National Academy of Sciences of the United States of America 2014 Aug;111(34):12522-7
  • Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains.
    Kyrpides, Nikos C; Hugenholtz, Philip; Eisen, Jonathan A; Woyke, Tanja; Göker, Markus; Parker, Charles T; Amann, Rudolf; Beck, Brian J; Chain, Patrick S G; Chun, Jongsik; Colwell, Rita R; Danchin, Antoine; Dawyndt, Peter; Dedeurwaerdere, Tom; DeLong, Edward F; Detter, John C; De Vos, Paul; Donohue, Timothy J; Dong, Xiu-Zhu; Ehrlich, Dusko S; Fraser, Claire; Gibbs, Richard; Gilbert, Jack; Gilna, Paul; Glöckner, Frank Oliver; Jansson, Janet K; Keasling, Jay D; Knight, Rob; Labeda, David; Lapidus, Alla; Lee, Jung-Sook; Li, Wen-Jun; Ma, Juncai; Markowitz, Victor; Moore, Edward R B; Morrison, Mark; Meyer, Folker; Nelson, Karen E; Ohkuma, Moriya; Ouzounis, Christos A; Pace, Norman; Parkhill, Julian; Qin, Nan; Rossello-Mora, Ramon; Sikorski, Johannes; Smith, David; Sogin, Mitch; Stevens, Rick; Stingl, Uli; Suzuki, Ken-Ichiro; Taylor, Dorothea; Tiedje, Jim M; Tindall, Brian; Wagner, Michael; Weinstock, George; Weissenbach, Jean; White, Owen; Wang, Jun; Zhang, Lixin; Zhou, Yu-Guang; Field, Dawn; Whitman, William B; Garrity, George M; Klenk, Hans-Peter PLoS biology 2014 Aug;12(8):e1001920
  • The common marmoset genome provides insight into primate biology and evolution.
    Worley, Kim C; Warren, Wesley C; Rogers, Jeffrey; Locke, Devin; Muzny, Donna M; Mardis, Elaine R; Weinstock, George M; Tardif, Suzette D; Aagaard, Kjersti M; Archidiacono, Nicoletta; Rayan, Nirmala Arul; Batzer, Mark A; Beal, Kathryn; Brejova, Brona; Capozzi, Oronzo; Capuano, Saverio B; Casola, Claudio; Chandrabose, Mimi M; Cree, Andrew; Dao, Marvin Diep; de Jong, Pieter J; Del Rosario, Ricardo Cruz-Herrera; Delehaunty, Kim D; Dinh, Huyen H; Eichler, Evan E; Fitzgerald, Stephen; Flicek, Paul; Fontenot, Catherine C; Fowler, R Gerald; Fronick, Catrina; Fulton, Lucinda A; Fulton, Robert S; Gabisi, Ramatu Ayiesha; Gerlach, Daniel; Graves, Tina A; Gunaratne, Preethi H; Hahn, Matthew W; Haig, David; Han, Yi; Harris, R Alan; Herrero, Javier; Hillier, LaDeana W; Hubley, Robert; Hughes, Jennifer F; Hume, Jennifer; Jhangiani, Shalini N; Jorde, Lynn B; Joshi, Vandita; Karakor, Emre; Konkel, Miriam K; Kosiol, Carolin; Kovar, Christie L; Kriventseva, Evgenia V; Lee, Sandra L; Lewis, Lora R; Liu, Yih-Shin; Lopez, John; Lopez-Otin, Carlos; Lorente-Galdos, Belen; Mansfield, Keith G; Marques-Bonet, Tomas; Minx, Patrick; Misceo, Doriana; Moncrieff, J Scott; Morgan, Margaret B; Nazareth, Lynne V; Newsham, Irene; Nguyen, Ngoc Bich; Okwuonu, Geoffrey O; Prabhakar, Shyam; Perales, Lora; Pu, Ling-Ling; Puente, Xose S; Quesada, Victor; Ranck, Megan C; Raney, Brian J; Raveendran, Muthuswamy; Deiros, David Rio; Rocchi, Mariano; Rodriguez, David; Ross, Corinna; Ruffier, Magali; Ruiz, San Juana; Sajjadian, Saba; Santibanez, Jireh; Schrider, Daniel R; Searle, Steve; Skaletsky, Helen; Soibam, Benjamin; Smit, Arian F A; Tennakoon, Jayantha B; Tomaska, Lubomir; Ullmer, Brygg; Vejnar, Charles E; Ventura, Mario; Vilella, Albert J; Vinar, Tomas; Vogel, Jan-Hinnerk; Walker, Jerilyn A; Wang, Qing; Warner, Crystal M; Wildman, Derek E; Witherspoon, David J; Wright, Rita A; Wu, Yuanqing; Xiao, Weimin; Xing, Jinchuan; Zdobnov, Evgeny M; Zhu, Baoli; Gibbs, Richard A; Wilson, Richard K Nature genetics 2014 Aug;46(8):850-7
  • Whole-genome analyses of Enterococcus faecium isolates with diverse daptomycin MICs.
    Diaz, Lorena; Tran, Truc T; Munita, Jose M; Miller, William R; Rincon, Sandra; Carvajal, Lina P; Wollam, Aye; Reyes, Jinnethe; Panesso, Diana; Rojas, Natalia L; Shamoo, Yousif; Murray, Barbara E; Weinstock, George M; Arias, Cesar A Antimicrobial agents and chemotherapy 2014 Aug;58(8):4527-34
  • Sepsis from the gut: the enteric habitat of bacteria that cause late-onset neonatal bloodstream infections.
    Carl, Mike A; Ndao, I Malick; Springman, A Cody; Manning, Shannon D; Johnson, James R; Johnston, Brian D; Burnham, Carey-Ann D; Weinstock, Erica Sodergren; Weinstock, George M; Wylie, Todd N; Mitreva, Makedonka; Abubucker, Sahar; Zhou, Yanjiao; Stevens, Harold J; Hall-Moore, Carla; Julian, Samuel; Shaikh, Nurmohammad; Warner, Barbara B; Tarr, Phillip I Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2014 May;58(9):1211-8
  • Transferable vancomycin resistance in a community-associated MRSA lineage.
    Rossi, Flávia; Diaz, Lorena; Wollam, Aye; Panesso, Diana; Zhou, Yanjiao; Rincon, Sandra; Narechania, Apurva; Xing, Galen; Di Gioia, Thais S R; Doi, André; Tran, Truc T; Reyes, Jinnethe; Munita, Jose M; Carvajal, Lina P; Hernandez-Roldan, Alejandra; Brandão, Denise; van der Heijden, Inneke Marie; Murray, Barbara E; Planet, Paul J; Weinstock, George M; Arias, Cesar A The New England journal of medicine 2014 Apr;370(16):1524-31
  • Phylogenomics and the dynamic genome evolution of the genus Streptococcus.
    Richards, Vincent P; Palmer, Sara R; Pavinski Bitar, Paulina D; Qin, Xiang; Weinstock, George M; Highlander, Sarah K; Town, Christopher D; Burne, Robert A; Stanhope, Michael J Genome biology and evolution 2014 Apr;6(4):741-53
  • The relationships between environmental bacterial exposure, airway bacterial colonization, and asthma.
    Beigelman, Avraham; Weinstock, George M; Bacharier, Leonard B Current opinion in allergy and clinical immunology 2014 Apr;14(2):137-42
  • Exome-based mapping and variant prioritization for inherited Mendelian disorders.
    Koboldt, Daniel C; Larson, David E; Sullivan, Lori S; Bowne, Sara J; Steinberg, Karyn M; Churchill, Jennifer D; Buhr, Aimee C; Nutter, Nathan; Pierce, Eric A; Blanton, Susan H; Weinstock, George M; Wilson, Richard K; Daiger, Stephen P American journal of human genetics 2014 Mar;94(3):373-84
  • TIGRA: a targeted iterative graph routing assembler for breakpoint assembly.
    Chen, Ken; Chen, Lei; Fan, Xian; Wallis, John; Ding, Li; Weinstock, George Genome research 2014 Feb;24(2):310-7
  • Application of next-generation sequencing to identify genes and mutations causing autosomal dominant retinitis pigmentosa (adRP).
    Daiger, Stephen P; Bowne, Sara J; Sullivan, Lori S; Blanton, Susan H; Weinstock, George M; Koboldt, Daniel C; Fulton, Robert S; Larsen, David; Humphries, Peter; Humphries, Marian M; Pierce, Eric A; Chen, Rui; Li, Yumei Advances in experimental medicine and biology 2014 Jan;801123-9
  • Exploration of bacterial community classes in major human habitats.
    Zhou, Yanjiao; Mihindukulasuriya, Kathie A; Gao, Hongyu; La Rosa, Patricio S; Wylie, Kristine M; Martin, John C; Kota, Karthik; Shannon, William D; Mitreva, Makedonka; Sodergren, Erica; Weinstock, George M Genome biology 2014 Jan;15(5):R66
  • High-resolution quantification of hepatitis C virus genome-wide mutation load and its correlation with the outcome of peginterferon-alpha2a and ribavirin combination therapy.
    Wang, Weihua; Zhang, Xiaoan; Xu, Yanjuan; Weinstock, George M; Di Bisceglie, Adrian M; Fan, Xiaofeng PloS one 2014 Jan;9(6):e100131
  • Inactivation of SAM-methyltransferase is the mechanism of attenuation of a historic louse borne typhus vaccine strain.
    Liu, Yan; Wu, Bin; Weinstock, George; Walker, David H; Yu, Xue-Jie PloS one 2014 Jan;9(11):e113285
  • Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel.
    Delaneau, Olivier; Marchini, Jonathan; 1000 Genomes Project Consortium; 1000 Genomes Project Consortium Nature communications 2014 Jan;53934
  • Metagenomic analysis of double-stranded DNA viruses in healthy adults.
    Wylie, Kristine M; Mihindukulasuriya, Kathie A; Zhou, Yanjiao; Sodergren, Erica; Storch, Gregory A; Weinstock, George M BMC biology 2014 Jan;1271
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    Peacock, Sharon J; Weinstock, George M Genome medicine 2014 Jan;6(11):103
  • Plant-associated symbiotic Burkholderia species lack hallmark strategies required in mammalian pathogenesis.
    Angus, Annette A; Agapakis, Christina M; Fong, Stephanie; Yerrapragada, Shailaja; Estrada-de los Santos, Paulina; Yang, Paul; Song, Nannie; Kano, Stephanie; Caballero-Mellado, Jésus; de Faria, Sergio M; Dakora, Felix D; Weinstock, George; Hirsch, Ann M PloS one 2014 Jan;9(1):e83779
  • The conjunctival microbiome in health and trachomatous disease: a case control study.
    Zhou, Yanjiao; Holland, Martin J; Makalo, Pateh; Joof, Hassan; Roberts, Chrissy H; Mabey, David Cw; Bailey, Robin L; Burton, Matthew J; Weinstock, George M; Burr, Sarah E Genome medicine 2014 Jan;6(11):99
  • Whole-Genome Sequencing of Salmonella enterica subsp. enterica Serovar Cubana Strains Isolated from Agricultural Sources.
    Benahmed, Faiza H; Gopinath, Gopal R; Wang, Hua; Jean-Gilles Beaubrun, Junia; Grim, Christopher; Cheng, Chorng-Ming; McClelland, Michael; Ayers, Sherry; Abbott, Jason; Desai, Prerak; Frye, Jonathan G; Weinstock, George; Hammack, Thomas S; Hanes, Darcy E; Rasmussen, Mark A; Davidson, Maureen K Genome announcements 2014 Jan;2(1):
  • A novel intronic single nucleotide polymorphism in the myosin heavy polypeptide 4 gene is responsible for the mini-muscle phenotype characterized by major reduction in hind-limb muscle mass in mice.
    Kelly, Scott A; Bell, Timothy A; Selitsky, Sara R; Buus, Ryan J; Hua, Kunjie; Weinstock, George M; Garland, Theodore; Pardo-Manuel de Villena, Fernando; Pomp, Daniel Genetics 2013 Dec;195(4):1385-95
  • Precise dissection of an Escherichia coli O157:H7 outbreak by single nucleotide polymorphism analysis.
    Turabelidze, George; Lawrence, Steven J; Gao, Hongyu; Sodergren, Erica; Weinstock, George M; Abubucker, Sahar; Wylie, Todd; Mitreva, Makedonka; Shaikh, Nurmohammad; Gautom, Romesh; Tarr, Phillip I Journal of clinical microbiology 2013 Dec;51(12):3950-4
  • Coverage theories for metagenomic DNA sequencing based on a generalization of Stevens' theorem.
    Wendl, Michael C; Kota, Karthik; Weinstock, George M; Mitreva, Makedonka Journal of mathematical biology 2013 Nov;67(5):1141-61
  • Integrative annotation of variants from 1092 humans: application to cancer genomics.
    Khurana, Ekta; Fu, Yao; Colonna, Vincenza; Mu, Xinmeng Jasmine; Kang, Hyun Min; Lappalainen, Tuuli; Sboner, Andrea; Lochovsky, Lucas; Chen, Jieming; Harmanci, Arif; Das, Jishnu; Abyzov, Alexej; Balasubramanian, Suganthi; Beal, Kathryn; Chakravarty, Dimple; Challis, Daniel; Chen, Yuan; Clarke, Declan; Clarke, Laura; Cunningham, Fiona; Evani, Uday S; Flicek, Paul; Fragoza, Robert; Garrison, Erik; Gibbs, Richard; Gümüs, Zeynep H; Herrero, Javier; Kitabayashi, Naoki; Kong, Yong; Lage, Kasper; Liluashvili, Vaja; Lipkin, Steven M; MacArthur, Daniel G; Marth, Gabor; Muzny, Donna; Pers, Tune H; Ritchie, Graham R S; Rosenfeld, Jeffrey A; Sisu, Cristina; Wei, Xiaomu; Wilson, Michael; Xue, Yali; Yu, Fuli; 1000 Genomes Project Consortium; Dermitzakis, Emmanouil T; Yu, Haiyuan; Rubin, Mark A; Tyler-Smith, Chris; Gerstein, Mark Science (New York, N.Y.) 2013 Oct;342(6154):1235587
  • Propionibacterium acnes strain populations in the human skin microbiome associated with acne.
    Fitz-Gibbon, Sorel; Tomida, Shuta; Chiu, Bor-Han; Nguyen, Lin; Du, Christine; Liu, Minghsun; Elashoff, David; Erfe, Marie C; Loncaric, Anya; Kim, Jenny; Modlin, Robert L; Miller, Jeff F; Sodergren, Erica; Craft, Noah; Weinstock, George M; Li, Huiying The Journal of investigative dermatology 2013 Sep;133(9):2152-60
  • Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations.
    Lang, Gregory I; Rice, Daniel P; Hickman, Mark J; Sodergren, Erica; Weinstock, George M; Botstein, David; Desai, Michael M Nature 2013 Aug;500(7464):571-4
  • Virome genomics: a tool for defining the human virome.
    Wylie, Kristine M; Weinstock, George M; Storch, Gregory A Current opinion in microbiology 2013 Aug;16(4):479-84
  • Use of bronchoalveolar lavage to assess the respiratory microbiome: signal in the noise.
    Twigg, Homer L; Morris, Alison; Ghedin, Elodie; Curtis, Jeffrey L; Huffnagle, Gary B; Crothers, Kristina; Campbell, Thomas B; Flores, Sonia C; Fontenot, Andrew P; Beck, James M; Huang, Laurence; Lynch, Susan; Knox, Kenneth S; Weinstock, George The Lancet. Respiratory medicine 2013 Jul;1(5):354-6
  • Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens.
    Aylward, Frank O; Burnum-Johnson, Kristin E; Tringe, Susannah G; Teiling, Clotilde; Tremmel, Daniel M; Moeller, Joseph A; Scott, Jarrod J; Barry, Kerrie W; Piehowski, Paul D; Nicora, Carrie D; Malfatti, Stephanie A; Monroe, Matthew E; Purvine, Samuel O; Goodwin, Lynne A; Smith, Richard D; Weinstock, George M; Gerardo, Nicole M; Suen, Garret; Lipton, Mary S; Currie, Cameron R Applied and environmental microbiology 2013 Jun;79(12):3770-8
  • Comparison of the respiratory microbiome in healthy nonsmokers and smokers.
    Morris, Alison; Beck, James M; Schloss, Patrick D; Campbell, Thomas B; Crothers, Kristina; Curtis, Jeffrey L; Flores, Sonia C; Fontenot, Andrew P; Ghedin, Elodie; Huang, Laurence; Jablonski, Kathleen; Kleerup, Eric; Lynch, Susan V; Sodergren, Erica; Twigg, Homer; Young, Vincent B; Bassis, Christine M; Venkataraman, Arvind; Schmidt, Thomas M; Weinstock, George M; Day, R B; Dong, Q; Gao, X; Gebregziabher, N; Gregory, R; Katz, B; Knox, K S; Mi, D; Munro, D; Nelson, D E; Revanna, K; Rong, R; Toh, E; Ye, Y; Auld, E; Calderon, F; Fong, S; Malki, A; Stone, S; Tokman, S; Allhouse, A; Clemente, J; Cota-Gomez, A; Dsouza, M; Hammer, K; Hansen, A; Kerwin, L; Li, M; Lin, M; Linderman, D; Putnam, B; Rounds, T; Ames, T; Freeman, C; Geal, T; McCloskey, L; McCubbrey, A; Myers, A; Reyes, M; Riddell, J; Busch, M; Camp, D; Dermand, J; Fong, S; George, M P; Gingo, M; Greenblatt, R; Hoffman, R; Huang, L; Kessinger, C; Kleerup, E; Lawther, T; Leo, N; Lucht, L; Wang, J; Iwai, S; Knight, R; Luzopone, C; Ursell, L; Huffnagle, G; Astrovskaya, I; DePasse, J V; Fitch, A; Paulson, J; Pop, M; Saira, K; Herter, B; O'Laughlin, M; Applebaum, E; Mihindukulasuriya, K; Foulkes, M A; Drews, K L; Firrell, L S; Maddipatla, Z; Nilakanta, H; Tipton, L; Colombini-Hatch, S; Peavy, H; Schmetter, B American journal of respiratory and critical care medicine 2013 May;187(10):1067-75
  • Widespread colonization of the lung by Tropheryma whipplei in HIV infection.
    Lozupone, Catherine; Cota-Gomez, Adela; Palmer, Brent E; Linderman, Derek J; Charlson, Emily S; Sodergren, Erica; Mitreva, Makedonka; Abubucker, Sahar; Martin, John; Yao, Guohui; Campbell, Thomas B; Flores, Sonia C; Ackerman, Gail; Stombaugh, Jesse; Ursell, Luke; Beck, James M; Curtis, Jeffrey L; Young, Vincent B; Lynch, Susan V; Huang, Laurence; Weinstock, George M; Knox, Kenneth S; Twigg, Homer; Morris, Alison; Ghedin, Elodie; Bushman, Frederic D; Collman, Ronald G; Knight, Rob; Fontenot, Andrew P American journal of respiratory and critical care medicine 2013 May;187(10):1110-7
  • Quantitation and composition of cutaneous microbiota in diabetic and nondiabetic men.
    Redel, Henry; Gao, Zhan; Li, Huilin; Alekseyenko, Alexander V; Zhou, Yanjiao; Perez-Perez, Guillermo I; Weinstock, George; Sodergren, Erica; Blaser, Martin J The Journal of infectious diseases 2013 Apr;207(7):1105-14
  • Structure of rrn operons in pathogenic non-cultivable treponemes: sequence but not genomic position of intergenic spacers correlates with classification of Treponema pallidum and Treponema paraluiscuniculi strains.
    Cejková, Darina; Zobaníková, Marie; Pospísilová, Petra; Strouhal, Michal; Mikalová, Lenka; Weinstock, George M; Smajs, David Journal of medical microbiology 2013 Feb;62(Pt 2):196-207
  • Genomic variation landscape of the human gut microbiome.
    Schloissnig, Siegfried; Arumugam, Manimozhiyan; Sunagawa, Shinichi; Mitreva, Makedonka; Tap, Julien; Zhu, Ana; Waller, Alison; Mende, Daniel R; Kultima, Jens Roat; Martin, John; Kota, Karthik; Sunyaev, Shamil R; Weinstock, George M; Bork, Peer Nature 2013 Jan;493(7430):45-50
  • Biogeography of the ecosystems of the healthy human body.
    Zhou, Yanjiao; Gao, Hongyu; Mihindukulasuriya, Kathie A; La Rosa, Patricio S; Wylie, Kristine M; Vishnivetskaya, Tatiana; Podar, Mircea; Warner, Barb; Tarr, Phillip I; Nelson, David E; Fortenberry, J Dennis; Holland, Martin J; Burr, Sarah E; Shannon, William D; Sodergren, Erica; Weinstock, George M Genome biology 2013 Jan;14(1):R1
  • Candidate genes that may be responsible for the unusual resistances exhibited by Bacillus pumilus SAFR-032 spores.
    Tirumalai, Madhan R; Rastogi, Rajat; Zamani, Nader; O'Bryant Williams, Elisha; Allen, Shamail; Diouf, Fatma; Kwende, Sharon; Weinstock, George M; Venkateswaran, Kasthuri J; Fox, George E PloS one 2013 Jan;8(6):e66012
  • Daptomycin-resistant Enterococcus faecalis diverts the antibiotic molecule from the division septum and remodels cell membrane phospholipids.
    Tran, Truc T; Panesso, Diana; Mishra, Nagendra N; Mileykovskaya, Eugenia; Guan, Ziqianq; Munita, Jose M; Reyes, Jinnethe; Diaz, Lorena; Weinstock, George M; Murray, Barbara E; Shamoo, Yousif; Dowhan, William; Bayer, Arnold S; Arias, Cesar A mBio 2013 Jan;4(4):
  • Epidemiological investigation of Pseudomonas aeruginosa isolates from a six-year-long hospital outbreak using high-throughput whole genome sequencing.
    Snyder, L A; Loman, N J; Faraj, L A; Levi, K; Weinstock, G; Boswell, T C; Pallen, M J; Ala'Aldeen, D A Euro surveillance : bulletin Européen sur les maladies transmissibles = European communicable disease bulletin 2013 Jan;18(42):
  • Evolutionary Genomics of Salmonella enterica Subspecies.
    Desai, Prerak T; Porwollik, Steffen; Long, Fred; Cheng, Pui; Wollam, Aye; Bhonagiri-Palsikar, Veena; Hallsworth-Pepin, Kymberlie; Clifton, Sandra W; Weinstock, George M; McClelland, Michael mBio 2013 Jan;4(2):
  • Pan-genome and comparative genome analyses of propionibacterium acnes reveal its genomic diversity in the healthy and diseased human skin microbiome.
    Tomida, Shuta; Nguyen, Lin; Chiu, Bor-Han; Liu, Jared; Sodergren, Erica; Weinstock, George M; Li, Huiying mBio 2013 Jan;4(3):e00003-13
  • Resequencing of Treponema pallidum ssp. pallidum strains Nichols and SS14: correction of sequencing errors resulted in increased separation of syphilis treponeme subclusters.
    Petrošová, Helena; Pospíšilová, Petra; Strouhal, Michal; Cejková, Darina; Zobaníková, Marie; Mikalová, Lenka; Sodergren, Erica; Weinstock, George M; Šmajs, David PloS one 2013 Jan;8(9):e74319
  • Sixty years of genome biology.
    Doolittle, W Ford; Fraser, Peter; Gerstein, Mark B; Graveley, Brenton R; Henikoff, Steven; Huttenhower, Curtis; Oshlack, Alicia; Ponting, Chris P; Rinn, John L; Schatz, Michael C; Ule, Jernej; Weigel, Detlef; Weinstock, George M Genome biology 2013 Jan;14(4):113
  • Systems biology of the vervet monkey.
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  • Conservation of Ebp-type pilus genes among Enterococci and demonstration of their role in adherence of Enterococcus faecalis to human platelets.
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  • Variation in genome-wide mutation rates within and between human families.
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  • Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.
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  • Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons.
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  • Mapping copy number variation by population-scale genome sequencing.
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  • Comparative and demographic analysis of orang-utan genomes.
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  • A vertebrate case study of the quality of assemblies derived from next-generation sequences.
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  • Complete genome sequence of Treponema paraluiscuniculi, strain Cuniculi A: the loss of infectivity to humans is associated with genome decay.
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  • Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development.
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  • Identification of disease-causing mutations in autosomal dominant retinitis pigmentosa (adRP) using next-generation DNA sequencing.
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  • The functional spectrum of low-frequency coding variation.
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  • The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle.
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  • The volatile microbiome.
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  • Diversity of human copy number variation and multicopy genes.
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  • A map of human genome variation from population-scale sequencing.
    1000 Genomes Project Consortium; Abecasis, Gonçalo R; Altshuler, David; Auton, Adam; Brooks, Lisa D; Durbin, Richard M; Gibbs, Richard A; Hurles, Matt E; McVean, Gil A Nature 2010 Oct;467(7319):1061-73
  • A catalog of reference genomes from the human microbiome.
    Nelson, Karen E; Weinstock, George M; Highlander, Sarah K; Worley, Kim C; Creasy, Heather Huot; Wortman, Jennifer Russo; Rusch, Douglas B; Mitreva, Makedonka; Sodergren, Erica; Chinwalla, Asif T; Feldgarden, Michael; Gevers, Dirk; Haas, Brian J; Madupu, Ramana; Ward, Doyle V; Birren, Bruce W; Gibbs, Richard A; Methe, Barbara; Petrosino, Joseph F; Strausberg, Robert L; Sutton, Granger G; White, Owen R; Wilson, Richard K; Durkin, Scott; Giglio, Michelle Gwinn; Gujja, Sharvari; Howarth, Clint; Kodira, Chinnappa D; Kyrpides, Nikos; Mehta, Teena; Muzny, Donna M; Pearson, Matthew; Pepin, Kymberlie; Pati, Amrita; Qin, Xiang; Yandava, Chandri; Zeng, Qiandong; Zhang, Lan; Berlin, Aaron M; Chen, Lei; Hepburn, Theresa A; Johnson, Justin; McCorrison, Jamison; Miller, Jason; Minx, Pat; Nusbaum, Chad; Russ, Carsten; Sykes, Sean M; Tomlinson, Chad M; Young, Sarah; Warren, Wesley C; Badger, Jonathan; Crabtree, Jonathan; Markowitz, Victor M; Orvis, Joshua; Cree, Andrew; Ferriera, Steve; Fulton, Lucinda L; Fulton, Robert S; Gillis, Marcus; Hemphill, Lisa D; Joshi, Vandita; Kovar, Christie; Torralba, Manolito; Wetterstrand, Kris A; Abouellleil, Amr; Wollam, Aye M; Buhay, Christian J; Ding, Yan; Dugan, Shannon; FitzGerald, Michael G; Holder, Mike; Hostetler, Jessica; Clifton, Sandra W; Allen-Vercoe, Emma; Earl, Ashlee M; Farmer, Candace N; Liolios, Konstantinos; Surette, Michael G; Xu, Qiang; Pohl, Craig; Wilczek-Boney, Katarzyna; Zhu, Dianhui Science (New York, N.Y.) 2010 May;328(5981):994-9
  • High-throughput whole-genome sequencing to dissect the epidemiology of Acinetobacter baumannii isolates from a hospital outbreak.
    Lewis, T; Loman, N J; Bingle, L; Jumaa, P; Weinstock, G M; Mortiboy, D; Pallen, M J The Journal of hospital infection 2010 May;75(1):37-41
  • Genome remodelling in a basal-like breast cancer metastasis and xenograft.
    Ding, Li; Ellis, Matthew J; Li, Shunqiang; Larson, David E; Chen, Ken; Wallis, John W; Harris, Christopher C; McLellan, Michael D; Fulton, Robert S; Fulton, Lucinda L; Abbott, Rachel M; Hoog, Jeremy; Dooling, David J; Koboldt, Daniel C; Schmidt, Heather; Kalicki, Joelle; Zhang, Qunyuan; Chen, Lei; Lin, Ling; Wendl, Michael C; McMichael, Joshua F; Magrini, Vincent J; Cook, Lisa; McGrath, Sean D; Vickery, Tammi L; Appelbaum, Elizabeth; Deschryver, Katherine; Davies, Sherri; Guintoli, Therese; Lin, Li; Crowder, Robert; Tao, Yu; Snider, Jacqueline E; Smith, Scott M; Dukes, Adam F; Sanderson, Gabriel E; Pohl, Craig S; Delehaunty, Kim D; Fronick, Catrina C; Pape, Kimberley A; Reed, Jerry S; Robinson, Jody S; Hodges, Jennifer S; Schierding, William; Dees, Nathan D; Shen, Dong; Locke, Devin P; Wiechert, Madeline E; Eldred, James M; Peck, Josh B; Oberkfell, Benjamin J; Lolofie, Justin T; Du, Feiyu; Hawkins, Amy E; O'Laughlin, Michelle D; Bernard, Kelly E; Cunningham, Mark; Elliott, Glendoria; Mason, Mark D; Thompson, Dominic M; Ivanovich, Jennifer L; Goodfellow, Paul J; Perou, Charles M; Weinstock, George M; Aft, Rebecca; Watson, Mark; Ley, Timothy J; Wilson, Richard K; Mardis, Elaine R Nature 2010 Apr;464(7291):999-1005
  • A SNP discovery method to assess variant allele probability from next-generation resequencing data.
    Shen, Yufeng; Wan, Zhengzheng; Coarfa, Cristian; Drabek, Rafal; Chen, Lei; Ostrowski, Elizabeth A; Liu, Yue; Weinstock, George M; Wheeler, David A; Gibbs, Richard A; Yu, Fuli Genome research 2010 Feb;20(2):273-80
  • Characteristic male urine microbiomes associate with asymptomatic sexually transmitted infection.
    Nelson, David E; Van Der Pol, Barbara; Dong, Qunfeng; Revanna, Kashi V; Fan, Baochang; Easwaran, Shraddha; Sodergren, Erica; Weinstock, George M; Diao, Lixia; Fortenberry, J Dennis PloS one 2010 Jan;5(11):e14116
  • Enteric defensins are essential regulators of intestinal microbial ecology.
    Salzman, Nita H; Hung, Kuiechun; Haribhai, Dipica; Chu, Hiutung; Karlsson-Sjöberg, Jenny; Amir, Elad; Teggatz, Paul; Barman, Melissa; Hayward, Michael; Eastwood, Daniel; Stoel, Maaike; Zhou, Yanjiao; Sodergren, Erica; Weinstock, George M; Bevins, Charles L; Williams, Calvin B; Bos, Nicolaas A Nature immunology 2010 Jan;11(1):76-83
  • Genome analysis of Treponema pallidum subsp. pallidum and subsp. pertenue strains: most of the genetic differences are localized in six regions.
    Mikalová, Lenka; Strouhal, Michal; Cejková, Darina; Zobaníková, Marie; Pospíšilová, Petra; Norris, Steven J; Sodergren, Erica; Weinstock, George M; Šmajs, David PloS one 2010 Jan;5(12):e15713
  • Genome sequencing reveals widespread virulence gene exchange among human Neisseria species.
    Marri, Pradeep Reddy; Paniscus, Mary; Weyand, Nathan J; Rendón, María A; Calton, Christine M; Hernández, Diana R; Higashi, Dustin L; Sodergren, Erica; Weinstock, George M; Rounsley, Steven D; So, Magdalene PloS one 2010 Jan;5(7):e11835
  • Simple sequence repeats in Helicobacter canadensis and their role in phase variable expression and C-terminal sequence switching.
    Snyder, Lori A S; Loman, Nicholas J; Linton, James D; Langdon, Rebecca R; Weinstock, George M; Wren, Brendan W; Pallen, Mark J BMC genomics 2010 Jan;1167
  • Targeted high-throughput DNA sequencing for gene discovery in retinitis pigmentosa.
    Daiger, Stephen P; Sullivan, Lori S; Bowne, Sara J; Birch, David G; Heckenlively, John R; Pierce, Eric A; Weinstock, George M Advances in experimental medicine and biology 2010 Jan;664325-31
  • A collagen-binding adhesin, Acb, and ten other putative MSCRAMM and pilus family proteins of Streptococcus gallolyticus subsp. gallolyticus (Streptococcus bovis Group, biotype I).
    Sillanpää, Jouko; Nallapareddy, Sreedhar R; Qin, Xiang; Singh, Kavindra V; Muzny, Donna M; Kovar, Christie L; Nazareth, Lynne V; Gibbs, Richard A; Ferraro, Mary J; Steckelberg, James M; Weinstock, George M; Murray, Barbara E Journal of bacteriology 2009 Nov;191(21):6643-53
  • Genomics. Genome project standards in a new era of sequencing.
    Chain, P S G; Grafham, D V; Fulton, R S; Fitzgerald, M G; Hostetler, J; Muzny, D; Ali, J; Birren, B; Bruce, D C; Buhay, C; Cole, J R; Ding, Y; Dugan, S; Field, D; Garrity, G M; Gibbs, R; Graves, T; Han, C S; Harrison, S H; Highlander, S; Hugenholtz, P; Khouri, H M; Kodira, C D; Kolker, E; Kyrpides, N C; Lang, D; Lapidus, A; Malfatti, S A; Markowitz, V; Metha, T; Nelson, K E; Parkhill, J; Pitluck, S; Qin, X; Read, T D; Schmutz, J; Sozhamannan, S; Sterk, P; Strausberg, R L; Sutton, G; Thomson, N R; Tiedje, J M; Weinstock, G; Wollam, A; Detter, J C Science (New York, N.Y.) 2009 Oct;326(5950):236-7
  • Prepublication data sharing.
    Birney, Ewan; Hudson, Thomas J; Green, Eric D; Gunter, Chris; Eddy, Sean; Rogers, Jane; Harris, Jennifer R; Ehrlich, S Dusko; Apweiler, Rolf; Austin, Christopher P; Berglund, Lisa; Bobrow, Martin; Bountra, Chas; Brookes, Anthony J; Cambon-Thomsen, Anne; Carter, Nigel P; Chisholm, Rex L; Contreras, Jorge L; Cooke, Robert M; Crosby, William L; Dewar, Ken; Durbin, Richard; Dyke, Stephanie O M; Ecker, Joseph R; El Emam, Khaled; Feuk, Lars; Gabriel, Stacey B; Gallacher, John; Gelbart, William M; Granell, Antoni; Guarner, Francisco; Hubbard, Tim; Jackson, Scott A; Jennings, Jennifer L; Joly, Yann; Jones, Steven M; Kaye, Jane; Kennedy, Karen L; Knoppers, Bartha Maria; Kyrpides, Nikos C; Lowrance, William W; Luo, Jingchu; MacKay, John J; Martín-Rivera, Luis; McCombie, W Richard; McPherson, John D; Miller, Linda; Miller, Webb; Moerman, Don; Mooser, Vincent; Morton, Cynthia C; Ostell, James M; Ouellette, B F Francis; Parkhill, Julian; Raina, Parminder S; Rawlings, Christopher; Scherer, Steven E; Scherer, Stephen W; Schofield, Paul N; Sensen, Christoph W; Stodden, Victoria C; Sussman, Michael R; Tanaka, Toshihiro; Thornton, Janet; Tsunoda, Tatsuhiko; Valle, David; Vuorio, Eero I; Walker, Neil M; Wallace, Susan; Weinstock, George; Whitman, William B; Worley, Kim C; Wu, Cathy; Wu, Jiayan; Yu, Jun Nature 2009 Sep;461(7261):168-70
  • Genome sequence of the emerging pathogen Helicobacter canadensis.
    Loman, N J; Snyder, L A S; Linton, J D; Langdon, R; Lawson, A J; Weinstock, G M; Wren, B W; Pallen, M J Journal of bacteriology 2009 Sep;191(17):5566-7
  • VarScan: variant detection in massively parallel sequencing of individual and pooled samples.
    Koboldt, Daniel C; Chen, Ken; Wylie, Todd; Larson, David E; McLellan, Michael D; Mardis, Elaine R; Weinstock, George M; Wilson, Richard K; Ding, Li Bioinformatics (Oxford, England) 2009 Sep;25(17):2283-5
  • Macrolide treatment failure in a case of secondary syphilis: a novel A2059G mutation in the 23S rRNA gene of Treponema pallidum subsp. pallidum.
    Matejková, Petra; Flasarová, Magdalena; Zákoucká, Hana; Borek, Milan; Kremenová, Sona; Arenberger, Petr; Woznicová, Vladana; Weinstock, George M; Smajs, David Journal of medical microbiology 2009 Jun;58(Pt 6):832-6
  • Lineage-specific biology revealed by a finished genome assembly of the mouse.
    Church, Deanna M; Goodstadt, Leo; Hillier, Ladeana W; Zody, Michael C; Goldstein, Steve; She, Xinwe; Bult, Carol J; Agarwala, Richa; Cherry, Joshua L; DiCuccio, Michael; Hlavina, Wratko; Kapustin, Yuri; Meric, Peter; Maglott, Donna; Birtle, Zoë; Marques, Ana C; Graves, Tina; Zhou, Shiguo; Teague, Brian; Potamousis, Konstantinos; Churas, Christopher; Place, Michael; Herschleb, Jill; Runnheim, Ron; Forrest, Daniel; Amos-Landgraf, James; Schwartz, David C; Cheng, Ze; Lindblad-Toh, Kerstin; Eichler, Evan E; Ponting, Chris P; Muzny, Donna M; Dugan-Rocha, Shannon; Ding, Yan; Scherer, Steven E; Buhay, Christian J; Cree, Andrew; Hernandez, Judith; Holder, Michael; Hume, Jennifer; Jackson, Laronda R; Kovar, Christie; Lee, Sandra L; Lewis, Lora R; Metzker, Michael L; Narareth, Lynne V; Sabo, Aniko; Sodergren, Erica; Gibbs, Richard A; Zody, Michael C; FitzGerald, Michael; Cook, April; Jaffe, David B; Garber, Manuel; Zimmer, Andrew R; Pirun, Mono; Russell, Lyndsey; Sharpe, Ted; Chaturvedi, Michael Kamal-Kabir; Wilkinson, Jane; LaButti, Kurt; Yang, Xiaoping; Bessette, Daniel; Allen, Nicole R; Nguyen, Cindy; Nguyen, Thu; Dunbar, Chelsea; Lubonja, Rakela; Matthews, Charles; Liu, Xiaohong; Benamara, Mostafa; Negash, Tamrat; Lokyitsang, Tashi; Decktor, Karin; Piqani, Bruno; Munson, Glen; Tenzin, Pema; Stone, Sabrina; Macdonald, Pendexter; Arachchi, Harindra; Abouelleil, Amr; Lui, Annie; Priest, Margaret; Gearin, Gary; Brown, Adam; Aftuck, Lynne; Shea, Terrance; Sykes, Sean; Berlin, Aaron; Chu, Jeff; Dooley, Kathleen; Hagopian, Daniel; Hall, Jennifer; Hafez, Nabil; Smith, Cherylyn L; Olandt, Peter; Miller, Karen; Ventkataraman, Vijay; Rachupka, Anthony; Dorris, Lester; Ayotte, Laura; Mabbitt, Richard; Erickson, Jeffrey; Horn, Andrea; An, Peter; Naylor, Jerome W; Settipalli, Sampath; Lander, Eric S; Lindblad-Toh, Kerstin; Wilson, Richard K; Graves, Tina A; Fulton, Robert S; Rock, Susan M; Hillier, LaDeana W; Chinwalla, Asif T; Bernard, Kelly; Courtney, Laura P; Fronick, Catrina; Fulton, Lucinda L; O'Laughlin, Michelle; Kremitzki, Colin L; Minx, Patrick J; Nelson, Joanne O; Schatzkamer, Kyriena L; Strong, Cynthia; Wollam, Aye M; Weinstock, George M; Yang, Shiaw-Pyng; Rogers, Jane; Grafham, Darren; Humphray, Sean; Nicholson, Christine; Bird, Christine; Brown, Andrew J; Burton, John; Clee, Chris; Hunt, Adrienne; Jones, Matt C; Lloyd, Christine; Matthews, Lucy; Mclaren, Karen; Mclaren, Stuart; McLay, Kirsten; Palmer, Sophie A; Plumb, Robert; Shownkeen, Ratna; Sims, Sarah; Quail, Mike A; Whitehead, Siobhan L; Willey, David L PLoS biology 2009 May;7(5):e1000112
  • Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds.
    Gibbs, Richard A; Taylor, Jeremy F; Van Tassell, Curtis P; Barendse, William; Eversole, Kellye A; Gill, Clare A; Green, Ronnie D; Hamernik, Debora L; Kappes, Steven M; Lien, Sigbjørn; Matukumalli, Lakshmi K; McEwan, John C; Nazareth, Lynne V; Schnabel, Robert D; Weinstock, George M; Wheeler, David A; Ajmone-Marsan, Paolo; Boettcher, Paul J; Caetano, Alexandre R; Garcia, Jose Fernando; Hanotte, Olivier; Mariani, Paola; Skow, Loren C; Sonstegard, Tad S; Williams, John L; Diallo, Boubacar; Hailemariam, Lemecha; Martinez, Mario L; Morris, Chris A; Silva, Luiz O C; Spelman, Richard J; Mulatu, Woudyalew; Zhao, Keyan; Abbey, Colette A; Agaba, Morris; Araujo, Flábio R; Bunch, Rowan J; Burton, James; Gorni, Chiara; Olivier, Hanotte; Harrison, Blair E; Luff, Bill; Machado, Marco A; Mwakaya, Joel; Plastow, Graham; Sim, Warren; Smith, Timothy; Thomas, Merle B; Valentini, Alessio; Williams, Paul; Womack, James; Woolliams, John A; Liu, Yue; Qin, Xiang; Worley, Kim C; Gao, Chuan; Jiang, Huaiyang; Moore, Stephen S; Ren, Yanru; Song, Xing-Zhi; Bustamante, Carlos D; Hernandez, Ryan D; Muzny, Donna M; Patil, Shobha; San Lucas, Anthony; Fu, Qing; Kent, Matthew P; Vega, Richard; Matukumalli, Aruna; McWilliam, Sean; Sclep, Gert; Bryc, Katarzyna; Choi, Jungwoo; Gao, Hong; Grefenstette, John J; Murdoch, Brenda; Stella, Alessandra; Villa-Angulo, Rafael; Wright, Mark; Aerts, Jan; Jann, Oliver; Negrini, Riccardo; Goddard, Mike E; Hayes, Ben J; Bradley, Daniel G; Barbosa da Silva, Marcos; Lau, Lilian P L; Liu, George E; Lynn, David J; Panzitta, Francesca; Dodds, Ken G Science (New York, N.Y.) 2009 Apr;324(5926):528-32
  • The genome sequence of taurine cattle: a window to ruminant biology and evolution.
    Elsik, Christine G; Tellam, Ross L; Worley, Kim C; Gibbs, Richard A; Muzny, Donna M; Weinstock, George M; Adelson, David L; Eichler, Evan E; Elnitski, Laura; Guigó, Roderic; Hamernik, Debora L; Kappes, Steve M; Lewin, Harris A; Lynn, David J; Nicholas, Frank W; Reymond, Alexandre; Rijnkels, Monique; Skow, Loren C; Zdobnov, Evgeny M; Schook, Lawrence; Womack, James; Alioto, Tyler; Antonarakis, Stylianos E; Astashyn, Alex; Chapple, Charles E; Chen, Hsiu-Chuan; Chrast, Jacqueline; Câmara, Francisco; Ermolaeva, Olga; Henrichsen, Charlotte N; Hlavina, Wratko; Kapustin, Yuri; Kiryutin, Boris; Kitts, Paul; Kokocinski, Felix; Landrum, Melissa; Maglott, Donna; Pruitt, Kim; Sapojnikov, Victor; Searle, Stephen M; Solovyev, Victor; Souvorov, Alexandre; Ucla, Catherine; Wyss, Carine; Anzola, Juan M; Gerlach, Daniel; Elhaik, Eran; Graur, Dan; Reese, Justin T; Edgar, Robert C; McEwan, John C; Payne, Gemma M; Raison, Joy M; Junier, Thomas; Kriventseva, Evgenia V; Eyras, Eduardo; Plass, Mireya; Donthu, Ravikiran; 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Moore, Stephen S; Roberts, Andy; Taniguchi, Masaaki; Waterman, Richard C; Chacko, Joseph; Chandrabose, Mimi M; Cree, Andy; Dao, Marvin Diep; Dinh, Huyen H; Gabisi, Ramatu Ayiesha; Hines, Sandra; Hume, Jennifer; Jhangiani, Shalini N; Joshi, Vandita; Kovar, Christie L; Lewis, Lora R; Liu, Yih-Shin; Lopez, John; Morgan, Margaret B; Nguyen, Ngoc Bich; Okwuonu, Geoffrey O; Ruiz, San Juana; Santibanez, Jireh; Wright, Rita A; Buhay, Christian; Ding, Yan; Dugan-Rocha, Shannon; Herdandez, Judith; Holder, Michael; Sabo, Aniko; Egan, Amy; Goodell, Jason; Wilczek-Boney, Katarzyna; Fowler, Gerald R; Hitchens, Matthew Edward; Lozado, Ryan J; Moen, Charles; Steffen, David; Warren, James T; Zhang, Jingkun; Chiu, Readman; Schein, Jacqueline E; Durbin, K James; Havlak, Paul; Jiang, Huaiyang; Liu, Yue; Qin, Xiang; Ren, Yanru; Shen, Yufeng; Song, Henry; Bell, Stephanie Nicole; Davis, Clay; Johnson, Angela Jolivet; Lee, Sandra; Nazareth, Lynne V; Patel, Bella Mayurkumar; Pu, Ling-Ling; Vattathil, Selina; Williams, Rex Lee; 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  • Bos taurus genome assembly.
    Liu, Yue; Qin, Xiang; Song, Xing-Zhi Henry; Jiang, Huaiyang; Shen, Yufeng; Durbin, K James; Lien, Sigbjørn; Kent, Matthew Peter; Sodeland, Marte; Ren, Yanru; Zhang, Lan; Sodergren, Erica; Havlak, Paul; Worley, Kim C; Weinstock, George M; Gibbs, Richard A BMC genomics 2009 Jan;10180
  • Somatic mutations affect key pathways in lung adenocarcinoma.
    Ding, Li; Getz, Gad; Wheeler, David A; Mardis, Elaine R; McLellan, Michael D; Cibulskis, Kristian; Sougnez, Carrie; Greulich, Heidi; Muzny, Donna M; Morgan, Margaret B; Fulton, Lucinda; Fulton, Robert S; Zhang, Qunyuan; Wendl, Michael C; Lawrence, Michael S; Larson, David E; Chen, Ken; Dooling, David J; Sabo, Aniko; Hawes, Alicia C; Shen, Hua; Jhangiani, Shalini N; Lewis, Lora R; Hall, Otis; Zhu, Yiming; Mathew, Tittu; Ren, Yanru; Yao, Jiqiang; Scherer, Steven E; Clerc, Kerstin; Metcalf, Ginger A; Ng, Brian; Milosavljevic, Aleksandar; Gonzalez-Garay, Manuel L; Osborne, John R; Meyer, Rick; Shi, Xiaoqi; Tang, Yuzhu; Koboldt, Daniel C; Lin, Ling; Abbott, Rachel; Miner, Tracie L; Pohl, Craig; Fewell, Ginger; Haipek, Carrie; Schmidt, Heather; Dunford-Shore, Brian H; Kraja, Aldi; Crosby, Seth D; Sawyer, Christopher S; Vickery, Tammi; Sander, Sacha; Robinson, Jody; Winckler, Wendy; Baldwin, Jennifer; Chirieac, Lucian R; Dutt, Amit; Fennell, Tim; Hanna, Megan; Johnson, Bruce E; Onofrio, Robert C; Thomas, Roman K; Tonon, Giovanni; Weir, Barbara A; Zhao, Xiaojun; Ziaugra, Liuda; Zody, Michael C; Giordano, Thomas; Orringer, Mark B; Roth, Jack A; Spitz, Margaret R; Wistuba, Ignacio I; Ozenberger, Bradley; Good, Peter J; Chang, Andrew C; Beer, David G; Watson, Mark A; Ladanyi, Marc; Broderick, Stephen; Yoshizawa, Akihiko; Travis, William D; Pao, William; Province, Michael A; Weinstock, George M; Varmus, Harold E; Gabriel, Stacey B; Lander, Eric S; Gibbs, Richard A; Meyerson, Matthew; Wilson, Richard K Nature 2008 Oct;455(7216):1069-75
  • A high-throughput percentage-of-binding strategy to measure binding energies in DNA-protein interactions: application to genome-scale site discovery.
    Wang, Xiaohu; Gao, Haichun; Shen, Yufeng; Weinstock, George M; Zhou, Jizhong; Palzkill, Timothy Nucleic acids research 2008 Sep;36(15):4863-71
  • Large scale variation in Enterococcus faecalis illustrated by the genome analysis of strain OG1RF.
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  • Identification of novel and cross-species seroreactive proteins from Bacillus anthracis using a ligation-independent cloning-based, SOS-inducible expression system.
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