Faculty Directory › UConn Health

George M. Weinstock, Ph.D.

Director, Microbial Genomics Professor, The Jackson Laboratory for Genomic Medicine

Academic Office Location: The Jackson Laboratory for Genomic Medicine 10 Discovery Drive Farmington, CT 06032
Phone:	860-837-2420
Email:	george.weinstock@jax.org
Website(s):	Genetics & Developmental Biology Graduate Program Weinstock Lab Page

Education & Training
Committees & Organizations
Lab Rotations
Publications

Education

Degree	Institution	Major
B.S.	University of Michigan	Biophysics
Ph.D.	Massachusetts Institute of Technology	Genetics and physical studies
Other	Stanford University Medical School	Biochemistry

Degree

Institution

Major

B.S.

University of Michigan

Biophysics

Ph.D.

Massachusetts Institute of Technology

Genetics and physical studies

Other

Stanford University Medical School

Biochemistry

Post-Graduate Training

Training	Institution	Specialty
Undergraduate Student		Training of undergraduate student, Fanny Chautin, 2003
Undergraduate Student		Training of undergraduate student, Adam Quarles, 1985
Undergraduate Student		Training of undergraduate student, Jennifer Reyna, 1992
Undergraduate Student		Training of undergraduate student, Jonathan Mathy, 1995
Undergraduate Student		Training of undergraduate student(s), Jeff Gralnick, Mack Kuo, Michelle Hibbard, 1996
Undergraduate Student		Training of undergraduate student(s), Patricia Jimenez, Susan Abramski, 2000
Undergraduate Student		Training of undergraduate student, Ying Xue (Zoey) Wang, 2013
Undergraduate Student		Training of undergraduate student, Alexis Beraducci, 2004 - 2005

Training

Institution

Specialty

Undergraduate Student

Training of undergraduate student, Fanny Chautin, 2003

Undergraduate Student

Training of undergraduate student, Adam Quarles, 1985

Undergraduate Student

Training of undergraduate student, Jennifer Reyna, 1992

Undergraduate Student

Training of undergraduate student, Jonathan Mathy, 1995

Undergraduate Student

Training of undergraduate student(s), Jeff Gralnick, Mack Kuo, Michelle Hibbard, 1996

Undergraduate Student

Training of undergraduate student(s), Patricia Jimenez, Susan Abramski, 2000

Undergraduate Student

Training of undergraduate student, Ying Xue (Zoey) Wang, 2013

Undergraduate Student

Training of undergraduate student, Alexis Beraducci, 2004 - 2005

Awards

Name of Award/Honor	Awarding Organization
Fellow	American Association for the Advancement of Science
Chancellor's Entrepreneurship and Innovation Award	University of Texas
Microbiology Lecturer	Waksman Foundation
Special Commendation	UTHHSC Graduate School of Biomedical Sciences
President, Graduate Faculty	UTHHSC
Vice-President, Graduate Faculty	UTHHSC
Fellow	American Academy of Microbiology
Senior Fellow	Human Genome Program
Outstanding Teacher Award [John P. McGovern]	University Texas Graduate School Biomed. Sci.
Dean's Teaching Excellence List	University Texas Houston Health Sciences Center
Fellow	Bank of America Giannini Foundation
Fellow	Jane Coffin Childs Memorial Fund for Medical Research

Name of Award/Honor

Awarding Organization

Fellow

American Association for the Advancement of Science

Chancellor's Entrepreneurship and Innovation Award

University of Texas

Microbiology Lecturer

Waksman Foundation

Special Commendation

UTHHSC Graduate School of Biomedical Sciences

President, Graduate Faculty

UTHHSC

Vice-President, Graduate Faculty

UTHHSC

Fellow

American Academy of Microbiology

Senior Fellow

Human Genome Program

Outstanding Teacher Award [John P. McGovern]

University Texas Graduate School Biomed. Sci.

Dean's Teaching Excellence List

University Texas Houston Health Sciences Center

Fellow

Bank of America Giannini Foundation

Fellow

Jane Coffin Childs Memorial Fund for Medical Research

Name & Description	Category	Role	Type	Scope	Start Year	End Year
Chair, Genomics Innovation Network, Genome CANADA	Other		External	International	2015
Executive Committee, Advanced Characterization Laboratory of U Conn Technology Park	Professional/Scientific Organization		UConn-Storrs	State	2015
Sci. Adv. Brd. [gMIND], Gut Microbiota In Neurodegenerative Diseases	Professional/Scientific Organization		External	International	2015
Infectious Disease Drug Discovery	Professional/Scientific Organization	Partnership		University	2015
UBC-Genome [Canadian First Research Excellence Fund]	Professional/Scientific Organization	BC Advisor	External	International	2015
Advisory Committee Member; JAX Genome Technology	Advisory Committee		Other	State	2015
Expert Advisory Panel [COMPARE (EU)]	Advisory Committee			University	2014	2015
Chair, Steering Comm., American Academy Microbiology Colloquium NGS for Pathogen Detection	Professional/Scientific Organization		Other	National	2014	2015
Oversight Committee, Science & Technology Innovative Centres, Genome CANADA	Professional/Scientific Organization		External	International	2014	2015
NSERC [Natural Sciences and Engineering Reseach Council of CANADA] Discovery Frontiers: Advancing Big Data Science in Genomics Research Panel	Professional/Scientific Organization		External	International	2014
Advisory Group Member; JAX IT	Advisory Committee		Other	State	2014	2015
Sequenching Operations Member; JAX Innovation Council	Education Committee		Other	State	2014	2015
Pre/Postdoc committee member	Education Committee		Other	State	2014	2015
Research Club Faculty Organizer; JGM Genomics	Research Committee		Other	State	2014	2015
Committee Member; JAX mouse facility for pathogen research	Research Committee		Other	State	2014	2015
Executive Committee Member, JGM	Education Committee		Other	State	2014	2015
Research Grant Committee Member; JAX	Research Committee		Other	State	2014	2015
JAX SAC and SAC-FAC	Advisory Committee		Other	State	2014	2015
Search Committee Member; JAX-U. Conn. Computational biology faculty position	Professional/Scientific Organization		Other	State	2014	2015
Search Committee Member; JAX-U. Conn. Statistical genetics faculty position	Professional/Scientific Organization		Other	State	2014	2015
Search Committee Member; JAX-U. Conn. Microbiome Faculty position	Professional/Scientific Organization		Other	State	2014	2015
Search Committee U. Conn. microbiome faculty position	Professional/Scientific Organization		UConn Health	University	2014	2015
Advisory Panel Member [Vervet Research Colony]; Wake Forest University Primate Center	Advisory Committee		Other	University	2013	2014
Advisory Board Member; Scientific OpGen	Advisory Committee	Member	External	National	2013	2014
Advisory Board; Scientific Real Time Genomics, New Zealand	Advisory Committee	Member	External	International	2013	2014
Identifier; Global Microbial Task Force	Professional/Scientific Organization	Member	External	International	2013	2014
Inspiration Mars Personalized Medicine Team NSERC Discovery Frontiers: Advancing Big Data Science in Genomics Research Panel, Ottawa, CANADA	Professional/Scientific Organization	Member	External	International	2013	2014
Task Force Member; Genome CANADA Disruptive Technology	Professional/Scientific Organization	Member	External	International	2012	2013
Sci. Adv. Board EU METACARDIS project	Professional/Scientific Organization	Member	External	International	2012	2015
Next-generation sequencing workshop, Genentech, SFO, CA	Workshop/Conference	Member	External	National	2012
Scientific Advisory Board, Program for Health, Philippine Genome Center, University of the Philippines	Professional/Scientific Organization	Member	External	International	2011	2015
Committee on Elections, American Academy of Microbiology	Professional/Scientific Organization	Chair	External	National	2011	2014
WHO Grand Challenges in Genomics for Public Health in Developing Countries, Expert Panel	Professional/Scientific Organization	Member	External	International	2011
Genome Canada SIAC Bioinformatics Working Group	Professional/Scientific Organization	Member	External	International	2011	2012
White House briefing on Microbial Forensics	Professional/Scientific Organization	Member	External	National	2011
NIH Workshop on Future of Human Microbiome Research, Bethesda, MD	Professional/Scientific Organization	Member	External	National	2011
Encyclopedia of Genetics	Professional/Scientific Organization	Genomics Section Editor	External	National	2010	2013
NHLBI Lung Human Microbiome Project Sequencing Committee, Bethesda, MD	Professional/Scientific Organization	Chair	External	National	2010	2011
NHLBI Lung Human Microbiome Project Publications Committee, Bethesda, MD	Professional/Scientific Organization	Chair	External	National	2010	2011
Board of Directors, Genome Canada; Program Committee	Professional/Scientific Organization	Chairman	External	International	2010	2015
Scientific Advisory Board, Michael Smith Genome Sciences Centre, Vancouver, CANADA	Professional/Scientific Organization	Member	External	International	2010	2015
NHLBI Lung Human Microbiome Project Steering Committee, Bethesda, MD	Professional/Scientific Organization	Co-Chair	External	National	2010	2015
Editorial Board, Genome Biology and Evolution	Editorial Board	Member	External	National	2009	2013
Editorial Board, BMC-Genomics	Editorial Board	Member	External	National	2005	2015
Editorial Board, Genome Research	Editorial Board	Member	External	National	2005	2015
Maize Genome Project External Advisory Committee	Advisory Committee	Chair	External	International	2005	2008
Advisory Board, Genome Biology	Advisory Committee	Member	External	National	2004	2015
Editorial Board, Plasmid	Editorial Board	Member	External	National	2002	2008
Journal of Bacteriology	Editorial Board	Member	External	National	1998	2004
National Center for Human Genome Research, National Institute of Health	Study Section	Member	External	National	1996
American Society for Microbiology, Microbial Genomics Committee	Professional/Scientific Organization	Member	External	National	1991
Scientific Advisory Board, Center for Comparative Animal Genetics, Institute for Biosciences, Texas A&M University, College Station, TX	Advisory Committee	Member	External	National	1989	1991
DNA and Cell Biology		Senior Editor	External	National	1987	2006
Search Committee for Chairman of Genetics Department, M.D. Anderson Cancer Center, Houston, TX	Other	Member	External	National	1985
JAX Scholars Selection Committee Member	Education Committee		Other	State		2014
American Academy of Microbiology (AAM)	Professional/Scientific Organization	Member	External	National
American Association for the Advancement of Science (AAAS)	Professional/Scientific Organization	Member	External	National
American Society for Biochemistry and Molecular Biology (ASBMB)	Professional/Scientific Organization	Member	External	National
American Society of Human Genetics (ASHG)	Professional/Scientific Organization	Member	External	National
American Society for Microbiology (ASM)	Professional/Scientific Organization	Member	External	National
Association for Computing Machinery (ACM)	Professional/Scientific Organization	Member	External	National
Federation of American Scientists (FAS)	Professional/Scientific Organization		External	National
Genetics Society of America (GSA)	Professional/Scientific Organization		External	National
Human Genome Organization International (HUGO)	Professional/Scientific Organization	Member	External	International
Sigma Xi	Other	Member		National
Current Opinion in Microbiology, volume 13, issue 5, Genomics section	Professional/Scientific Organization	Guest Editor	External	National		2010
Guest Editor, Research in Microbiology, volume 151, Genomics issue	Editorial Board	Member	External	National		2000
American Society for Human Genetics Annual Meeting, session organizer (Baltimore)	Professional/Scientific Organization	Member	External	National		2015
American Academy of Microbiology NGS Diagnostics Workshop	Workshop/Conference	Member	External	National		2015
International Human Microbiome Consortium Conference (Luxembourg)	Workshop/Conference	Member	External	International		2015
Jackson Laboratory for Genomic Medicine Grand Opening Scientific Symposium	Professional/Scientific Organization	Member	External	National		2014
Microbial Genomics Conference (Institut Pasteur)	Workshop/Conference	Member	External	International		2014
International Human Microbiome Consortium Conference (Hangzhou)	Workshop/Conference	Member	External	International		2013
Infectious Disease Genomics and Global Health (Sanger Institute, UK)	Professional/Scientific Organization	Member	External	International		2013
Infectious Disease Genomics and Global Health (Sanger Institute, UK) [not a duplicate] attended 2013 and 2012	Professional/Scientific Organization	Member	External	International		2012
Global Health Genomics (CSH-Asia, Suzhou, China)	Professional/Scientific Organization	Member	External	International		2012
International Human Microbiome Consortium Conference (Paris)	Workshop/Conference	Member	External	International		2012
Genome Canada Bioinformatics/Computational Biology Workshop (Toronto)	Workshop/Conference	Member	External	International		2011
State-of-the-Art Technology Colloquium, ASM Annual Meeting (New Orleans)	Professional/Scientific Organization	Member	External	National		2011
International Human Microbiome Consortium Conference (Vancouver)	Workshop/Conference	Member	External	International		2011
Human Microbiome Conference (St. Louis)	Workshop/Conference	Member	External	National		2010
Infectious Disease Genomics and Global Health (Sanger Institute, UK)	Professional/Scientific Organization	Member	External	International		2010
Institute of Electrical and Electronics Engineers (IEEE)	Other	Member	External	International

Name & Description

Journal Articles

Introduction to mammalian genome special issue: the microbiome in human health and disease.
Pavlovic, Guillaume; Seong, Je Kyung; Weinstock, George M Mammalian genome : official journal of the International Mammalian Genome Society 2021 Jun;
Circadian rhythms and the gut microbiome synchronize the host's metabolic response to diet.
Gutierrez Lopez, Diana E; Lashinger, Laura M; Weinstock, George M; Bray, Molly S Cell metabolism 2021 May;33(5):873-887
Bifidobacterium bifidum strains synergize with immune checkpoint inhibitors to reduce tumour burden in mice.
Lee, Se-Hoon; Cho, Sung-Yup; Yoon, Youngmin; Park, Changho; Sohn, Jinyoung; Jeong, Jin-Ju; Jeon, Bu-Nam; Jang, Mongjoo; An, Choa; Lee, Suro; Kim, Yun Yeon; Kim, Gihyeon; Kim, Sujeong; Kim, Yunjae; Lee, Gwang Bin; Lee, Eun Ju; Kim, Sang Gyun; Kim, Hong Sook; Kim, Yeongmin; Kim, Hyun; Yang, Hyun-Suk; Kim, Sarang; Kim, Seonggon; Chung, Hayung; Moon, Myeong Hee; Nam, Myung Hee; Kwon, Jee Young; Won, Sungho; Park, Joon-Suk; Weinstock, George M; Lee, Charles; Yoon, Kyoung Wan; Park, Hansoo Nature microbiology 2021 Mar;6(3):277-288
Supraglottic Lung Microbiome Taxa Are Associated with Pulmonary Abnormalities in an HIV Longitudinal Cohort.
Zhou, Jin J; Zhai, Jing; Zhou, Hua; Chen, Yin; Guerra, Stefano; Robey, Ian; Weinstock, George M; Weinstock, Erica; Dong, Qunfeng; Knox, Kenneth S; Twigg, Homer L American journal of respiratory and critical care medicine 2020 Dec;202(12):1727-1731
Deciphering functional redundancy in the human microbiome.
Tian, Liang; Wang, Xu-Wen; Wu, Ang-Kun; Fan, Yuhang; Friedman, Jonathan; Dahlin, Amber; Waldor, Matthew K; Weinstock, George M; Weiss, Scott T; Liu, Yang-Yu Nature communications 2020 Dec;11(1):6217
Genetic Basis of Aerobically Supported Voluntary Exercise: Results from a Selection Experiment with House Mice.
Hillis, David A; Yadgary, Liran; Weinstock, George M; Pardo-Manuel de Villena, Fernando; Pomp, Daniel; Fowler, Alexandra S; Xu, Shizhong; Chan, Frank; Garland, Theodore Genetics 2020 Nov;216(3):781-804
Approaches for integrating heterogeneous RNA-seq data reveal cross-talk between microbes and genes in asthmatic patients.
Spakowicz, Daniel; Lou, Shaoke; Barron, Brian; Gomez, Jose L; Li, Tianxiao; Liu, Qing; Grant, Nicole; Yan, Xiting; Hoyd, Rebecca; Weinstock, George; Chupp, Geoffrey L; Gerstein, Mark Genome biology 2020 Jun;21(1):150
Longitudinal Analysis of Serum Cytokine Levels and Gut Microbial Abundance Links IL-17/IL-22 with Clostridia and Insulin Sensitivity in Humans.
Zhou, Xin; Johnson, Jethro S; Spakowicz, Daniel; Zhou, Wenyu; Zhou, Yanjiao; Sodergren, Erica; Snyder, Michael; Weinstock, George M Diabetes 2020 May;
Improving Characterization of Understudied Human Microbiomes Using Targeted Phylogenetics.
Rosa, Bruce A; Mihindukulasuriya, Kathie; Hallsworth-Pepin, Kymberlie; Wollam, Aye; Martin, John; Snowden, Caroline; Dunne, William Michael; Weinstock, George M; Burnham, C A; Mitreva, Makedonka mSystems 2020 Feb;5(1):
Differences in Gut Microbiome in Hospitalized Immunocompetent vs. Immunocompromised Children, Including Those With Sickle Cell Disease.
Mohandas, Sindhu; Soma, Vijaya L; Tran, Thi Dong Binh; Sodergren, Erica; Ambooken, Tresa; Goldman, David L; Weinstock, George; Herold, Betsy C Frontiers in pediatrics 2020 Jan;8583446
The upper-airway microbiota and loss of asthma control among asthmatic children.
Zhou, Yanjiao; Jackson, Daniel; Bacharier, Leonard B; Mauger, David; Boushey, Homer; Castro, Mario; Durack, Juliana; Huang, Yvonne; Lemanske, Robert F; Storch, Gregory A; Weinstock, George M; Wylie, Kristine; Covar, Ronina; Fitzpatrick, Anne M; Phipatanakul, Wanda; Robison, Rachel G; Beigelman, Avraham Nature communications 2019 Dec;10(1):5714
Colon Cancer Prevention with Walnuts: A Longitudinal Study in Mice from the Perspective of a Gut Enterotype-like Cluster.
Chen, Yanfei; Nakanishi, Masako; Bautista, Eddy J; Qendro, Veneta; Sodergren, Erica; Rosenberg, Daniel W; Weinstock, George M Cancer prevention research (Philadelphia, Pa.) 2019 Dec;
Characterization of Mucosal Dysbiosis of Early Colonic Neoplasia.
Hong, Bo-Young; Ideta, Takayasu; Lemos, Bruno S; Igarashi, Yuichi; Tan, Yuliana; DiSiena, Michael; Mo, Allen; Birk, John W; Forouhar, Faripour; Devers, Thomas J; Weinstock, George M; Rosenberg, Daniel W NPJ Precision Oncology 2019 Nov;310
Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis.
Johnson, Jethro S; Spakowicz, Daniel J; Hong, Bo-Young; Petersen, Lauren M; Demkowicz, Patrick; Chen, Lei; Leopold, Shana R; Hanson, Blake M; Agresta, Hanako O; Gerstein, Mark; Sodergren, Erica; Weinstock, George M Nature communications 2019 Nov;10(1):5029
Microbiome Signatures Associated with Steatohepatitis and Moderate to Severe Fibrosis in Children With Nonalcoholic Fatty Liver Disease.
Schwimmer, Jeffrey B; Johnson, Jethro S; Angeles, Jorge E; Behling, Cynthia; Belt, Patricia H; Borecki, Ingrid; Bross, Craig; Durelle, Janis; Goyal, Nidhi P; Hamilton, Gavin; Holtz, Mary L; Lavine, Joel E; Mitreva, Makedonka; Newton, Kimberly P; Pan, Amy; Simpson, Pippa M; Sirlin, Claude B; Sodergren, Erica; Tyagi, Rahul; Yates, Katherine P; Weinstock, George; Salzman, Nita H Gastroenterology 2019 Jun;
A longitudinal big data approach for precision health.
Schüssler-Fiorenza Rose, Sophia Miryam; Contrepois, Kévin; Moneghetti, Kegan J; Zhou, Wenyu; Mishra, Tejaswini; Mataraso, Samson; Dagan-Rosenfeld, Orit; Ganz, Ariel B; Dunn, Jessilyn; Hornburg, Daniel; Rego, Shannon; Perelman, Dalia; Ahadi, Sara; Sailani, M Reza; Zhou, Yanjiao; Leopold, Shana R; Chen, Jieming; Ashland, Melanie; Christle, Jeffrey W; Avina, Monika; Limcaoco, Patricia; Ruiz, Camilo; Tan, Marilyn; Butte, Atul J; Weinstock, George M; Slavich, George M; Sodergren, Erica; McLaughlin, Tracey L; Haddad, Francois; Snyder, Michael P Nature medicine 2019 May;25(5):792-804
Longitudinal multi-omics of host-microbe dynamics in prediabetes.
Zhou, Wenyu; Sailani, M Reza; Contrepois, Kévin; Zhou, Yanjiao; Ahadi, Sara; Leopold, Shana R; Zhang, Martin J; Rao, Varsha; Avina, Monika; Mishra, Tejaswini; Johnson, Jethro; Lee-McMullen, Brittany; Chen, Songjie; Metwally, Ahmed A; Tran, Thi Dong Binh; Nguyen, Hoan; Zhou, Xin; Albright, Brandon; Hong, Bo-Young; Petersen, Lauren; Bautista, Eddy; Hanson, Blake; Chen, Lei; Spakowicz, Daniel; Bahmani, Amir; Salins, Denis; Leopold, Benjamin; Ashland, Melanie; Dagan-Rosenfeld, Orit; Rego, Shannon; Limcaoco, Patricia; Colbert, Elizabeth; Allister, Candice; Perelman, Dalia; Craig, Colleen; Wei, Eric; Chaib, Hassan; Hornburg, Daniel; Dunn, Jessilyn; Liang, Liang; Rose, Sophia Miryam Schüssler-Fiorenza; Kukurba, Kim; Piening, Brian; Rost, Hannes; Tse, David; McLaughlin, Tracey; Sodergren, Erica; Weinstock, George M; Snyder, Michael Nature 2019 May;569(7758):663-671
Chemotherapy-induced oral mucositis is associated with detrimental bacterial dysbiosis.
Hong, Bo-Young; Sobue, Takanori; Choquette, Linda; Dupuy, Amanda K; Thompson, Angela; Burleson, Joseph A; Salner, Andrew L; Schauer, Peter K; Joshi, Pujan; Fox, Evan; Shin, Dong-Guk; Weinstock, George M; Strausbaugh, Linda D; Dongari-Bagtzoglou, Anna; Peterson, Douglas E; Diaz, Patricia I Microbiome 2019 Apr;7(1):66
Association of the Infant Gut Microbiome With Early Childhood Neurodevelopmental Outcomes: An Ancillary Study to the VDAART Randomized Clinical Trial.
Sordillo, Joanne E; Korrick, Susan; Laranjo, Nancy; Carey, Vincent; Weinstock, George M; Gold, Diane R; O'Connor, George; Sandel, Megan; Bacharier, Leonard B; Beigelman, Avraham; Zeiger, Robert; Litonjua, Augusto A; Weiss, Scott T JAMA network open 2019 Mar;2(3):e190905
Rapid growth is a dominant predictor of hepcidin suppression and declining ferritin in Gambian infants.
Armitage, Andrew E; Agbla, Schadrac C; Betts, Modupeh; Sise, Ebrima A; Jallow, Momodou W; Sambou, Ellen; Darboe, Bakary; Worwui, Archibald; Weinstock, George M; Antonio, Martin; Pasricha, Sant-Rayn; Prentice, Andrew M; Drakesmith, Hal; Darboe, Momodou K; Kwambana-Adams, Brenda Anna Haematologica 2019 Feb;
MSC: a metagenomic sequence classification algorithm.
Saha, Subrata; Johnson, Jethro; Pal, Soumitra; Weinstock, George; Rajasekaran, Sanguthevar Bioinformatics (Oxford, England) 2019 Jan;
Symbiotic organs shaped by distinct modes of genome evolution in cephalopods.
Belcaid, Mahdi; Casaburi, Giorgio; McAnulty, Sarah J; Schmidbaur, Hannah; Suria, Andrea M; Moriano-Gutierrez, Silvia; Pankey, M Sabrina; Oakley, Todd H; Kremer, Natacha; Koch, Eric J; Collins, Andrew J; Nguyen, Hoan; Lek, Sai; Goncharenko-Foster, Irina; Minx, Patrick; Sodergren, Erica; Weinstock, George; Rokhsar, Daniel S; McFall-Ngai, Margaret; Simakov, Oleg; Foster, Jamie S; Nyholm, Spencer V Proceedings of the National Academy of Sciences of the United States of America 2019 Jan;
Diet during Pregnancy and Infancy and the Infant Intestinal Microbiome.
Savage, Jessica H; Lee-Sarwar, Kathleen A; Sordillo, Joanne E; Lange, Nancy E; Zhou, Yanjiao; O'Connor, George T; Sandel, Megan; Bacharier, Leonard B; Zeiger, Robert; Sodergren, Erica; Weinstock, George M; Gold, Diane R; Weiss, Scott T; Litonjua, Augusto A The Journal of pediatrics 2018 Aug;20347-54.e4
Intermittent Fasting Confers Protection in CNS Autoimmunity by Altering the Gut Microbiota.
Cignarella, Francesca; Cantoni, Claudia; Ghezzi, Laura; Salter, Amber; Dorsett, Yair; Chen, Lei; Phillips, Daniel; Weinstock, George M; Fontana, Luigi; Cross, Anne H; Zhou, Yanjiao*; Piccio, Laura* Cell metabolism 2018 Jun;27(6):1222-1235.e6 *Co-Corresponding Authors
Oral microbiome in HIV-infected women: Shifts in the abundance of pathogenic and beneficial bacteria are associated with aging, HIV load, CD4 count, and ART.
Lewy, Tyler; Hong, Bo-Young; Weiser, Barbara; Burger, Harold; Tremain, Andrew; Weinstock, George; Anastos, Kathryn; George, Michael AIDS research and human retroviruses 2018 May;
Extensive Gene Amplification as a Mechanism for Piperacillin-Tazobactam Resistance in Escherichia coli.
Schechter, Lisa M; Creely, David P; Garner, Cherilyn D; Shortridge, Dee; Nguyen, Hoan; Chen, Lei; Hanson, Blake M; Sodergren, Erica; Weinstock, George M; Dunne, W Michael; van Belkum, Alex; Leopold, Shana R mBio 2018 Apr;9(2):
Meta-analysis of the lung microbiota in pulmonary tuberculosis.
Hong, Bo-Young; Paulson, Joseph N; Stine, O Colin; Weinstock, George M; Cervantes, Jorge L Tuberculosis (Edinburgh, Scotland) 2018 Mar;109102-108
Integrative Personal Omics Profiles during Periods of Weight Gain and Loss.
Piening, Brian D; Zhou, Wenyu; Contrepois, Kévin; Röst, Hannes; Gu Urban, Gucci Jijuan; Mishra, Tejaswini; Hanson, Blake M; Bautista, Eddy J; Leopold, Shana; Yeh, Christine Y; Spakowicz, Daniel; Banerjee, Imon; Chen, Cynthia; Kukurba, Kimberly; Perelman, Dalia; Craig, Colleen; Colbert, Elizabeth; Salins, Denis; Rego, Shannon; Lee, Sunjae; Zhang, Cheng; Wheeler, Jessica; Sailani, M Reza; Liang, Liang; Abbott, Charles; Gerstein, Mark; Mardinoglu, Adil; Smith, Ulf; Rubin, Daniel L; Pitteri, Sharon; Sodergren, Erica; McLaughlin, Tracey L; Weinstock, George M; Snyder, Michael P Cell systems 2018 Feb;6(2):157-170.e8
Proteomics and metabolomics for analysis of the dynamics of microbiota.
Van Belkum, Alex; Broadwell, David; Lovern, Douglas; Petersen, Lauren; Weinstock, George; Dunne, W Michael Expert review of proteomics 2018 Feb;15(2):101-104
An Analysis of the Epidemic of Klebsiella pneumoniae Carbapenemase-Producing K. pneumoniae: Convergence of Two Evolutionary Mechanisms Creates the "Perfect Storm".
Rojas, Laura J; Weinstock, George M; De La Cadena, Elsa; Diaz, Lorena; Rios, Rafael; Hanson, Blake M; Brown, Joseph S; Vats, Purva; Phillips, Daniel S; Nguyen, Hoan; Hujer, Kristine M; Correa, Adriana; Adams, Mark D; Perez, Federico; Sodergren, Erica; Narechania, Apurva; Planet, Paul J; Villegas, Maria V; Bonomo, Robert A; Arias, Cesar A The Journal of infectious diseases 2017 Dec;217(1):82-92
Obesity and obesogenic growth are both highly heritable and modified by diet in a nonhuman primate model, the African green monkey (Chlorocebus aethiops sabaeus).
Schmitt, C A; Service, S K; Jasinska, A J; Dyer, T D; Jorgensen, M J; Cantor, R M; Weinstock, G M; Blangero, J; Kaplan, J R; Freimer, N B International journal of obesity (2005) 2017 Dec;42765-774
Ancient hybridization and strong adaptation to viruses across African vervet monkey populations.
Svardal, Hannes; Jasinska, Anna J; Apetrei, Cristian; Coppola, Giovanni; Huang, Yu; Schmitt, Christopher A; Jacquelin, Beatrice; Ramensky, Vasily; Müller-Trutwin, Michaela; Antonio, Martin; Weinstock, George; Grobler, J Paul; Dewar, Ken; Wilson, Richard K; Turner, Trudy R; Warren, Wesley C; Freimer, Nelson B; Nordborg, Magnus Nature genetics 2017 Oct;491705-1713
Genetic variation and gene expression across multiple tissues and developmental stages in a nonhuman primate.
Jasinska, Anna J; Zelaya, Ivette; Service, Susan K; Peterson, Christine B; Cantor, Rita M; Choi, Oi-Wa; DeYoung, Joseph; Eskin, Eleazar; Fairbanks, Lynn A; Fears, Scott; Furterer, Allison E; Huang, Yu S; Ramensky, Vasily; Schmitt, Christopher A; Svardal, Hannes; Jorgensen, Matthew J; Kaplan, Jay R; Villar, Diego; Aken, Bronwen L; Flicek, Paul; Nag, Rishi; Wong, Emily S; Blangero, John; Dyer, Thomas D; Bogomolov, Marina; Benjamini, Yoav; Weinstock, George M; Dewar, Ken; Sabatti, Chiara; Wilson, Richard K; Jentsch, J David; Warren, Wesley; Coppola, Giovanni; Woods, Roger P; Freimer, Nelson B Nature genetics 2017 Oct;491714-1721
Rapid replacement by non-vaccine pneumococcal serotypes may mitigate the impact of the pneumococcal conjugate vaccine on nasopharyngeal bacterial ecology.
Kwambana-Adams, Brenda; Hanson, Blake; Worwui, Archibald; Agbla, Schadrac; Foster-Nyarko, Ebenezer; Ceesay, Fatima; Ebruke, Chinelo; Egere, Uzochukwu; Zhou, Yanjiao; Ndukum, Maze; Sodergren, Erica; Barer, Michael; Adegbola, Richard; Weinstock, George; Antonio, Martin Scientific reports 2017 Aug;7(1):8127
Community characteristics of the gut microbiomes of competitive cyclists.
Petersen, Lauren M; Bautista, Eddy J; Nguyen, Hoan; Hanson, Blake M; Chen, Lei; Lek, Sai H; Sodergren, Erica; Weinstock, George M Microbiome 2017 Aug;5(1):98
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
Bowers, Robert M; Kyrpides, Nikos C; Stepanauskas, Ramunas; Harmon-Smith, Miranda; Doud, Devin; Reddy, T B K; Schulz, Frederik; Jarett, Jessica; Rivers, Adam R; Eloe-Fadrosh, Emiley A; Tringe, Susannah G; Ivanova, Natalia N; Copeland, Alex; Clum, Alicia; Becraft, Eric D; Malmstrom, Rex R; Birren, Bruce; Podar, Mircea; Bork, Peer; Weinstock, George M; Garrity, George M; Dodsworth, Jeremy A; Yooseph, Shibu; Sutton, Granger; Glöckner, Frank O; Gilbert, Jack A; Nelson, William C; Hallam, Steven J; Jungbluth, Sean P; Ettema, Thijs J G; Tighe, Scott; Konstantinidis, Konstantinos T; Liu, Wen-Tso; Baker, Brett J; Rattei, Thomas; Eisen, Jonathan A; Hedlund, Brian; McMahon, Katherine D; Fierer, Noah; Knight, Rob; Finn, Rob; Cochrane, Guy; Karsch-Mizrachi, Ilene; Tyson, Gene W; Rinke, Christian; Genome Standards Consortium; Lapidus, Alla; Meyer, Folker; Yilmaz, Pelin; Parks, Donovan H; Eren, A M; Schriml, Lynn; Banfield, Jillian F; Hugenholtz, Philip; Woyke, Tanja Nature biotechnology 2017 Aug;35(8):725-731
Molecular Epidemiology and Phylogenomics of Staphylococcus aureus Bacteremia in Latin-America: A Prospective Cohort Multicenter Study in Nine Countries.
Arias, Cesar A; Reyes, Jinnethe; Carvajal, Lina Paola; Rincon, Sandra; Diaz, Lorena; Panesso, Diana; Ibarra, Gabriel; Rios, Rafael; Munita, Jose M; Salles, Mauro J; Alvarez-Moreno, Carlos; Labarca, Jaime; Garcia, Coralith; Luna, Carlos M; Mejia-Villatoro, Carlos; Zurita, Jeannete; Guzman-Blanco, Manuel; Rodriguez-Noriega, Eduardo; Narechania, Apurva; Rojas, Laura J; Planet, Paul J; Weinstock, George M; Gotuzzo, Eduardo; Seas, Carlos Antimicrobial agents and chemotherapy 2017 Jul;61
A prospective microbiome-wide association study of food sensitization and food allergy in early childhood.
Savage, Jessica H; Lee-Sarwar, Kathleen A; Sordillo, Joanne; Bunyavanich, Supinda; Zhou, Yanjiao; O'Connor, George; Sandel, Megan; Bacharier, Leonard; Zeiger, Robert; Sodergren, Erica; Weinstock, George M; Gold, Diane R; Weiss, Scott T; Litonjua, Augusto A Allergy 2017 Jun;73145-152
Validation of Metagenomic Next-Generation Sequencing Tests for Universal Pathogen Detection.
Schlaberg, Robert; Chiu, Charles Y; Miller, Steve; Procop, Gary W; Weinstock, George; Professional Practice Committee and Committee on Laboratory Practices of the American Society for Microbiology; Microbiology Resource Committee of the College of American Pathologists Archives of pathology & laboratory medicine 2017 Jun;141(6):776-786
Ceftaroline-Resistant, Daptomycin-Tolerant, and Heterogeneous Vancomycin-Intermediate Methicillin-Resistant Staphylococcus aureus Causing Infective Endocarditis.
Nigo, Masayuki; Diaz, Lorena; Carvajal, Lina P; Tran, Truc T; Rios, Rafael; Panesso, Diana; Garavito, Juan D; Miller, William R; Wanger, Audrey; Weinstock, George; Munita, Jose M; Arias, Cesar A; Chambers, Henry F Antimicrobial agents and chemotherapy 2017 Mar;61(3):
Impact of Age, Caloric Restriction, and Influenza Infection on Mouse Gut Microbiome: An Exploratory Study of the Role of Age-Related Microbiome Changes on Influenza Responses.
Bartley, Jenna M; Zhou, Xin; Kuchel, George A; Weinstock, George M; Haynes, Laura Frontiers in immunology 2017 Jan;81164
Isolation of Methicillin-resistant Staphylococcus aureus and Multidrug-resistant Elizabethkingia meningoseptica From Neonates Within Minutes of Birth.
Kwambana-Adams, Brenda A; Laxton, Claire S; Foster-Nyarko, Ebenezer; Laxton, Claire S; Weinstock, George; Antonio, Martin The Pediatric infectious disease journal 2017 Jan;36(1):123-124
Factors Influencing the Infant Gut Microbiome at Age 3-6 months: Findings from the ethnically diverse Vitamin D Antenatal Asthma Reduction Trial (VDAART).
Sordillo, Joanne E; Zhou, Yanjiao; McGeachie, Michael J; Ziniti, John; Lange, Nancy; Laranjo, Nancy; Savage, Jessica R; Carey, Vincent; O'Connor, George; Sandel, Megan; Strunk, Robert; Bacharier, Leonard; Zeiger, Robert; Weiss, Scott T; Weinstock, George; Gold, Diane R; Litonjua, Augusto A The Journal of allergy and clinical immunology 2016 Oct;139482-491.e14
Symbiotic Burkholderia species show diverse arrangements of nif/fix and nod genes, and lack typical high affinity cytochrome cbb3 oxidase genes.
De Meyer, Sofie Elisabeth; Briscoe, Leah; Martinez-Hidalgo, Pilar; Agapakis, Christina; Estrada de Los Santos, Paulina; Seshadri, Rekha; Reeve, Wayne; Weinstock, George; O'Hara, Graham; Howieson, John; Hirsch, Ann M Molecular plant-microbe interactions : MPMI 2016 Jun;29609-19
Characterization of the bacterial and fungal microbiome in indoor dust and outdoor air samples: a pilot study.
Hanson, Blake; Zhou, Yanjiao; Bautista, Eddy J; Urch, Bruce; Speck, Mary; Silverman, Frances; Muilenberg, Michael; Phipatanakul, Wanda; Weinstock, George; Sodergren, Erica; Gold, Diane R; Sordillo, Joanne E Environmental science. Processes & impacts 2016 May;18713-24
Effects of walnut consumption on colon carcinogenesis and microbial community structure.
Nakanishi, Masako; Chen, Yanfei; Qendro, Veneta; Miyamoto, Shingo; Weinstock, Erica; Weinstock, George M; Rosenberg, Daniel W Cancer prevention research (Philadelphia, Pa.) 2016 May;9692-703
Gut bacteria dysbiosis and necrotising enterocolitis in very low birthweight infants: a prospective case-control study.
Warner, Barbara B; Deych, Elena; Zhou, Yanjiao; Hall-Moore, Carla; Weinstock, George M; Sodergren, Erica; Shaikh, Nurmohammad; Hoffmann, Julie A; Linneman, Laura A; Hamvas, Aaron; Khanna, Geetika; Rouggly-Nickless, Lucina C; Ndao, I Malick; Shands, Berkley A; Escobedo, Marilyn; Sullivan, Janice E; Radmacher, Paula G; Shannon, William D; Tarr, Phillip I Lancet (London, England) 2016 May;387(10031):1928-36
Role of Clinicogenomics in Infectious Disease Diagnostics and Public Health Microbiology.
Westblade, Lars F; van Belkum, Alex; Grundhoff, Adam; Weinstock, George M; Pamer, Eric G; Pallen, Mark J; Dunne, Wm Michael Journal of clinical microbiology 2016 Feb;541686-1693
R2d2 Drives Selfish Sweeps in the House Mouse.
Didion, John P; Morgan, Andrew P; Yadgary, Liran; Bell, Timothy A; McMullan, Rachel C; Ortiz de Solorzano, Lydia; Britton-Davidian, Janice; Bult, Carol J; Campbell, Karl J; Castiglia, Riccardo; Ching, Yung-Hao; Chunco, Amanda J; Crowley, James J; Chesler, Elissa J; Förster, Daniel W; French, John E; Gabriel, Sofia I; Gatti, Daniel M; Garland, Theodore; Giagia-Athanasopoulou, Eva B; Giménez, Mabel D; Grize, Sofia A; Gündüz, Islam; Holmes, Andrew; Hauffe, Heidi C; Herman, Jeremy S; Holt, James M; Hua, Kunjie; Jolley, Wesley J; Lindholm, Anna K; López-Fuster, María J; Mitsainas, George; da Luz Mathias, Maria; McMillan, Leonard; Ramalhinho, Maria da Graça Morgado; Rehermann, Barbara; Rosshart, Stephan P; Searle, Jeremy B; Shiao, Meng-Shin; Solano, Emanuela; Svenson, Karen L; Thomas-Laemont, Patricia; Threadgill, David W; Ventura, Jacint; Weinstock, George M; Pomp, Daniel; Churchill, Gary A; Pardo-Manuel de Villena, Fernando Molecular biology and evolution 2016 Feb;331381-95
Effect of Advanced HIV Infection on the Respiratory Microbiome.
Twigg Iii, Homer L; Knox, Kenneth S; Zhou, Jin; Crothers, Kristina A; Nelson, David E; Toh, Evelyn; Day, Richard B; Lin, Huaiying; Gao, Xiang; Dong, Qunfeng; Mi, Deming; Katz, Barry P; Sodergren, Erica; Weinstock, George M American journal of respiratory and critical care medicine 2016 Feb;194226-35
Metagenomic Approach for Identification of the Pathogens Associated with Diarrhea in Stool Specimens.
Zhou, Yanjiao; Wylie, Kristine M; El Feghaly, Rana E; Mihindukulasuriya, Kathie A; Elward, Alexis; Haslam, David B; Storch, Gregory A; Weinstock, George M Journal of clinical microbiology 2016 Feb;54(2):368-75
Household air pollution and the lung microbiome of healthy adults in Malawi: a cross-sectional study.
Rylance, Jamie; Kankwatira, Anstead; Nelson, David E; Toh, Evelyn; Day, Richard B; Lin, Huaiying; Gao, Xiang; Dong, Qunfeng; Sodergren, Erica; Weinstock, George M; Heyderman, Robert S; Twigg, Homer L; Gordon, Stephen B BMC microbiology 2016 Jan;16(1):182
Identification of a Novel Gene on 10q22.1 Causing Autosomal Dominant Retinitis Pigmentosa (adRP).
Daiger, Stephen P; Sullivan, Lori S; Bowne, Sara J; Koboldt, Daniel C; Blanton, Susan H; Wheaton, Dianna K; Avery, Cheryl E; Cadena, Elizabeth D; Koenekoop, Robert K; Fulton, Robert S; Wilson, Richard K; Weinstock, George M; Lewis, Richard A; Birch, David G Advances in experimental medicine and biology 2016 Jan;854193-200
Longitudinal Prediction of the Infant Gut Microbiome with Dynamic Bayesian Networks.
McGeachie, Michael J; Sordillo, Joanne E; Gibson, Travis; Weinstock, George M; Liu, Yang-Yu; Gold, Diane R; Weiss, Scott T; Litonjua, Augusto Scientific reports 2016 Jan;620359
The real cost of sequencing: scaling computation to keep pace with data generation.
Muir, Paul; Li, Shantao; Lou, Shaoke; Wang, Daifeng; Spakowicz, Daniel J; Salichos, Leonidas; Zhang, Jing; Weinstock, George M; Isaacs, Farren; Rozowsky, Joel; Gerstein, Mark Genome biology 2016 Jan;17(1):53
Parallel Epidemics of Community-Associated Methicillin-Resistant Staphylococcus aureus USA300 Infection in North and South America.
Planet, Paul J; Diaz, Lorena; Kolokotronis, Sergios-Orestis; Narechania, Apurva; Reyes, Jinnethe; Xing, Galen; Rincon, Sandra; Smith, Hannah; Panesso, Diana; Ryan, Chanelle; Smith, Dylan P; Guzman, Manuel; Zurita, Jeannete; Sebra, Robert; Deikus, Gintaras; Nolan, Rathel L; Tenover, Fred C; Weinstock, George M; Robinson, D Ashley; Arias, Cesar A The Journal of infectious diseases 2015 Dec;212(12):1874-82
The genome of the vervet (Chlorocebus aethiops sabaeus).
Warren, Wesley C; Jasinska, Anna J; García-Pérez, Raquel; Svardal, Hannes; Tomlinson, Chad; Rocchi, Mariano; Archidiacono, Nicoletta; Capozzi, Oronzo; Minx, Patrick; Montague, Michael J; Kyung, Kim; Hillier, LaDeana W; Kremitzki, Milinn; Graves, Tina; Chiang, Colby; Hughes, Jennifer; Tran, Nam; Huang, Yu; Ramensky, Vasily; Choi, Oi-Wa; Jung, Yoon J; Schmitt, Christopher A; Juretic, Nikoleta; Wasserscheid, Jessica; Turner, Trudy R; Wiseman, Roger W; Tuscher, Jennifer J; Karl, Julie A; Schmitz, Jörn E; Zahn, Roland; O'Connor, David H; Redmond, Eugene; Nisbett, Alex; Jacquelin, Béatrice; Müller-Trutwin, Michaela C; Brenchley, Jason M; Dione, Michel; Antonio, Martin; Schroth, Gary P; Kaplan, Jay R; Jorgensen, Matthew J; Thomas, Gregg W C; Hahn, Matthew W; Raney, Brian J; Aken, Bronwen; Nag, Rishi; Schmitz, Juergen; Churakov, Gennady; Noll, Angela; Stanyon, Roscoe; Webb, David; Thibaud-Nissen, Francoise; Nordborg, Magnus; Marques-Bonet, Tomas; Dewar, Ken; Weinstock, George M; Wilson, Richard K; Freimer, Nelson B Genome research 2015 Dec;25(12):1921-33
A Glimpse of Microbial Power in Preventive Medicine.
Weinstock, George M JAMA pediatrics 2015 Nov;17011
Discriminatory Indices of Typing Methods for Epidemiologic Analysis of Contemporary Staphylococcus aureus Strains.
Rodriguez, Marcela; Hogan, Patrick G; Satola, Sarah W; Crispell, Emily; Wylie, Todd; Gao, Hongyu; Sodergren, Erica; Weinstock, George M; Burnham, Carey-Ann D; Fritz, Stephanie A Medicine 2015 Sep;94(37):e1534
Multi-center Comparison of Lung and Oral Microbiomes of HIV-infected and HIV-uninfected Individuals.
Beck, James M; Schloss, Patrick D; Venkataraman, Arvind; Twigg Iii, Homer; Jablonski, Kathleen A; Bushman, Frederic D; Campbell, Thomas B; Charlson, Emily S; Collman, Ronald G; Crothers, Kristina; Curtis, Jeffrey L; Drews, Kimberly L; Flores, Sonia C; Fontenot, Andrew P; Foulkes, Mary A; Frank, Ian; Ghedin, Elodie; Huang, Laurence; Lynch, Susan V; Morris, Alison; Palmer, Brent E; Schmidt, Thomas M; Sodergren, Erica; Weinstock, George M; Young, Vincent B American journal of respiratory and critical care medicine 2015 Aug;1921335-44
Identification of functional variants for cleft lip with or without cleft palate in or near PAX7, FGFR2, and NOG by targeted sequencing of GWAS loci.
Leslie, Elizabeth J; Taub, Margaret A; Liu, Huan; Steinberg, Karyn Meltz; Koboldt, Daniel C; Zhang, Qunyuan; Carlson, Jenna C; Hetmanski, Jacqueline B; Wang, Hang; Larson, David E; Fulton, Robert S; Kousa, Youssef A; Fakhouri, Walid D; Naji, Ali; Ruczinski, Ingo; Begum, Ferdouse; Parker, Margaret M; Busch, Tamara; Standley, Jennifer; Rigdon, Jennifer; Hecht, Jacqueline T; Scott, Alan F; Wehby, George L; Christensen, Kaare; Czeizel, Andrew E; Deleyiannis, Frederic W-B; Schutte, Brian C; Wilson, Richard K; Cornell, Robert A; Lidral, Andrew C; Weinstock, George M; Beaty, Terri H; Marazita, Mary L; Murray, Jeffrey C American journal of human genetics 2015 Feb;96(3):397-411
A multi-megabase copy number gain causes maternal transmission ratio distortion on mouse chromosome 2.
Didion, John P; Morgan, Andrew P; Clayshulte, Amelia M-F; Mcmullan, Rachel C; Yadgary, Liran; Petkov, Petko M; Bell, Timothy A; Gatti, Daniel M; Crowley, James J; Hua, Kunjie; Aylor, David L; Bai, Ling; Calaway, Mark; Chesler, Elissa J; French, John E; Geiger, Thomas R; Gooch, Terry J; Garland, Theodore; Harrill, Alison H; Hunter, Kent; McMillan, Leonard; Holt, Matt; Miller, Darla R; O'Brien, Deborah A; Paigen, Kenneth; Pan, Wenqi; Rowe, Lucy B; Shaw, Ginger D; Simecek, Petr; Sullivan, Patrick F; Svenson, Karen L; Weinstock, George M; Threadgill, David W; Pomp, Daniel; Churchill, Gary A; Pardo-Manuel de Villena, Fernando PLoS genetics 2015 Feb;11(2):e1004850
Selection of models for the analysis of risk-factor trees: leveraging biological knowledge to mine large sets of risk factors with application to microbiome data.
Zhang, Qunyuan; Abel, Haley; Wells, Alan; Lenzini, Petra; Gomez, Felicia; Province, Michael A; Templeton, Alan A; Weinstock, George M; Salzman, Nita H; Borecki, Ingrid B Bioinformatics (Oxford, England) 2015 Jan;31(10):1607-13
Dynamic changes in the subgingival microbiome and their potential for diagnosis and prognosis of periodontitis.
Shi, Baochen; Chang, Michaela; Martin, John; Mitreva, Makedonka; Lux, Renate; Klokkevold, Perry; Sodergren, Erica; Weinstock, George M; Haake, Susan K; Li, Huiying mBio 2015 Jan;6(1):e01926-14
Longitudinal analysis of the premature infant intestinal microbiome prior to necrotizing enterocolitis: a case-control study.
Zhou, Yanjiao; Shan, Gururaj; Sodergren, Erica; Weinstock, George; Walker, W Allan; Gregory, Katherine E PloS one 2015 Jan;10(3):e0118632
Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment.
Nobel, Yael R; Cox, Laura M; Kirigin, Francis F; Bokulich, Nicholas A; Yamanishi, Shingo; Teitler, Isabel; Chung, Jennifer; Sohn, Jiho; Barber, Cecily M; Goldfarb, David S; Raju, Kartik; Abubucker, Sahar; Zhou, Yanjiao; Ruiz, Victoria E; Li, Huilin; Mitreva, Makedonka; Alekseyenko, Alexander V; Weinstock, George M; Sodergren, Erica; Blaser, Martin J Nature communications 2015 Jan;67486
Sequencing strategies and characterization of 721 vervet monkey genomes for future genetic analyses of medically relevant traits.
Huang, Yu S; Ramensky, Vasily; Service, Susan K; Jasinska, Anna J; Jung, Yoon; Choi, Oi-Wa; Cantor, Rita M; Juretic, Nikoleta; Wasserscheid, Jessica; Kaplan, Jay R; Jorgensen, Matthew J; Dyer, Thomas D; Dewar, Ken; Blangero, John; Wilson, Richard K; Warren, Wesley; Weinstock, George M; Freimer, Nelson B BMC biology 2015 Jan;1341
Small bowel resection induces long-term changes in the enteric microbiota of mice.
Sommovilla, J; Zhou, Y; Sun, R C; Choi, P M; Diaz-Miron, J; Shaikh, N; Sodergren, E; Warner, B B; Weinstock, G M; Tarr, P I; Warner, B W Journal of gastrointestinal surgery : official journal of the Society for Surgery of the Alimentary Tract 2015 Jan;19(1):56-64; discussion 64
The transcriptional profile of coronary arteritis in Kawasaki disease.
Rowley, Anne H; Wylie, Kristine M; Kim, Kwang-Youn A; Pink, Adam J; Yang, Amy; Reindel, Rebecca; Baker, Susan C; Shulman, Stanford T; Orenstein, Jan M; Lingen, Mark W; Weinstock, George M; Wylie, Todd N BMC genomics 2015 Jan;16(1):1076
HCoDES reveals chromosomal DNA end structures with single-nucleotide resolution.
Dorsett, Yair; Zhou, Yanjiao; Tubbs, Anthony T; Chen, Bo-Ruei; Purman, Caitlin; Lee, Baeck-Seung; George, Rosmy; Bredemeyer, Andrea L; Zhao, Jiang-Yang; Sodergen, Erica; Weinstock, George M; Han, Nathan D; Reyes, Alejandro; Oltz, Eugene M; Dorsett, Dale; Misulovin, Ziva; Payton, Jacqueline E; Sleckman, Barry P Molecular cell 2014 Dec;56(6):808-18
High-resolution genetic mapping in the diversity outbred mouse population identifies Apobec1 as a candidate gene for atherosclerosis.
Smallwood, Tangi L; Gatti, Daniel M; Quizon, Pamela; Weinstock, George M; Jung, Kuo-Chen; Zhao, Liyang; Hua, Kunjie; Pomp, Daniel; Bennett, Brian J G3 (Bethesda, Md.) 2014 Dec;4(12):2353-63
Phenotypic and genotypic analysis of Clostridium difficile isolates: a single-center study.
Zhou, Yanjiao; Burnham, Carey-Ann D; Hink, Tiffany; Chen, Lei; Shaikh, Nurmohammad; Wollam, Aye; Sodergren, Erica; Weinstock, George M; Tarr, Phillip I; Dubberke, Erik R Journal of clinical microbiology 2014 Dec;52(12):4260-6
A dominant mutation in hexokinase 1 (HK1) causes retinitis pigmentosa.
Sullivan, Lori S; Koboldt, Daniel C; Bowne, Sara J; Lang, Steven; Blanton, Susan H; Cadena, Elizabeth; Avery, Cheryl E; Lewis, Richard A; Webb-Jones, Kaylie; Wheaton, Dianna H; Birch, David G; Coussa, Razck; Ren, Huanan; Lopez, Irma; Chakarova, Christina; Koenekoop, Robert K; Garcia, Charles A; Fulton, Robert S; Wilson, Richard K; Weinstock, George M; Daiger, Stephen P Investigative ophthalmology & visual science 2014 Nov;55(11):7147-58
Whole genome sequence of the Treponema pallidum subsp. endemicum strain Bosnia A: the genome is related to yaws treponemes but contains few loci similar to syphilis treponemes.
Staudová, Barbora; Strouhal, Michal; Zobaníková, Marie; Cejková, Darina; Fulton, Lucinda L; Chen, Lei; Giacani, Lorenzo; Centurion-Lara, Arturo; Bruisten, Sylvia M; Sodergren, Erica; Weinstock, George M; Smajs, David PLoS neglected tropical diseases 2014 Nov;8(11):e3261
The Integrative Human Microbiome Project: dynamic analysis of microbiome-host omics profiles during periods of human health and disease.
Proctor, Lita M; Sechi, Salvatore; DiGiacomo, Nicholas D; Fettweis, Jennifer M; Jefferson, Kimberly K; Strauss, Jerome F; Rubens, Craig E; Brooks, J Paul; Girerd, Phillipe P; Huang, Bernice; Serrano, Myrna G; Sheth, Nihar U; Vivadelli, Stephany C; Asmussen, Niels C; Borzelleca, Joseph F; Bradley, Steven P; Brooks, Jamie L; Chalfant, Charles E; Dickinson, Molly R; Drake, Jennifer I; Edwards, David J; El Khoury, Joseph; Glascock, Abigail L; Gravett, Michael G; Hendricks-Muñoz, Karen D; Koparde, Vishal N; Lanni, Susan M; Lara, Ana M; Lee, Vladimir; Matveyev, Andrey V; Ozaki, Luiz V; Sexton, Amber S; Shyu, Conrad; Tran, Ann; Uetz, Peter H; Wijesinghe, Dayanjan S; Wijesooriya, Niran R; Xu, Jie; Buck, Gregory A; Huttenhower, Curtis; Gevers, Dirk; Sirota-Madi, Alexandra; Bayer, Keith; Braun, Jonathan; Denson, Lee A; Jansson, Janet K; Knight, Rob; Kugathasan, Subra; McGovern, Dermot P B; Petrosino, Joseph F; Stappenbeck, Thaddeus S; Birren, Bruce W; Clish, Clary B; Gonzalez, Antonio; Graeber, Thomas G; Lake, Kathleen; Li, Xiaoxiao; Loo, Joseph; McDonald, Daniel; Nicol, Rob; Nusbaum, Chad; Prasad, Mahadev; Ryu, Stacy; Sauk, Jenny; Schwager, Randall; Sturgeon, Holly; Tas, Neslihan; VanDussen, Kelli L; Wilson, Robin G; Yassour, Moran; Xavier, Ramnik J; Weinstock, George; McLaughlin, Tracey; Bernstein, Jonathan A; Zhou, Wenyu; Piening, Brian D; Kukurba, Kimberly; Allister, Candice; Butte, Atul J; Boyle, Sean M; Cao, Lulu; Chen, Rui; Contrepois, Kevin; Cooper, Breanna; Craig, Colleen; Datta, Somalee; Fan-Minogue, Hua; Gu, Gucci J; Hanson, Blake; Jiang, Lihua; Lek, Sai; Leopold, Benjamin; Leopold, Shana; Li-Pook-Than, Jennifer; Mitra, Siddhartha; Rego, Shannon; Sailani, M Reza; Salins, Denis; Sodergren, Erica; Soto Pérez, Paola; Takahashi, Shinichi; Snyder, Michael P; White, Owen; Mahurkar, Anup; Gwinn Giglio, Michelle Cell host & microbe 2014 Sep;16(3):276-89
CcpA is important for growth and virulence of Enterococcus faecium.
Somarajan, Sudha R; Roh, Jung H; Singh, Kavindra V; Weinstock, George M; Murray, Barbara E Infection and immunity 2014 Sep;82(9):3580-7
Characterization of mutations in the PAS domain of the EvgS sensor kinase selected by laboratory evolution for acid resistance in Escherichia coli.
Johnson, Matthew D; Bell, James; Clarke, Kim; Chandler, Rachel; Pathak, Prachi; Xia, Yandong; Marshall, Robert L; Weinstock, George M; Loman, Nicholas J; Winn, Peter J; Lund, Peter A Molecular microbiology 2014 Sep;93(5):911-27
Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages.
Deng, Xiangyu; Desai, Prerak T; den Bakker, Henk C; Mikoleit, Matthew; Tolar, Beth; Trees, Eija; Hendriksen, Rene S; Frye, Jonathan G; Porwollik, Steffen; Weimer, Bart C; Wiedmann, Martin; Weinstock, George M; Fields, Patricia I; McClelland, Michael Emerging infectious diseases 2014 Sep;20(9):1481-9
Patterned progression of bacterial populations in the premature infant gut.
La Rosa, Patricio S; Warner, Barbara B; Zhou, Yanjiao; Weinstock, George M; Sodergren, Erica; Hall-Moore, Carla M; Stevens, Harold J; Bennett, William E; Shaikh, Nurmohammad; Linneman, Laura A; Hoffmann, Julie A; Hamvas, Aaron; Deych, Elena; Shands, Berkley A; Shannon, William D; Tarr, Phillip I Proceedings of the National Academy of Sciences of the United States of America 2014 Aug;111(34):12522-7
Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains.
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The common marmoset genome provides insight into primate biology and evolution.
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High-resolution quantification of hepatitis C virus genome-wide mutation load and its correlation with the outcome of peginterferon-alpha2a and ribavirin combination therapy.
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Inactivation of SAM-methyltransferase is the mechanism of attenuation of a historic louse borne typhus vaccine strain.
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Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel.
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Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations.
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Virome genomics: a tool for defining the human virome.
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Use of bronchoalveolar lavage to assess the respiratory microbiome: signal in the noise.
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Quantitation and composition of cutaneous microbiota in diabetic and nondiabetic men.
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Candidate genes that may be responsible for the unusual resistances exhibited by Bacillus pumilus SAFR-032 spores.
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Pan-genome and comparative genome analyses of propionibacterium acnes reveal its genomic diversity in the healthy and diseased human skin microbiome.
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Resequencing of Treponema pallidum ssp. pallidum strains Nichols and SS14: correction of sequencing errors resulted in increased separation of syphilis treponeme subclusters.
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Systems biology of the vervet monkey.
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Whole genome sequence of the Treponema Fribourg-Blanc: unspecified simian isolate is highly similar to the yaws subspecies.
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Whole-genome analysis of a daptomycin-susceptible enterococcus faecium strain and its daptomycin-resistant variant arising during therapy.
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Detection of viruses in young children with fever without an apparent source.
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Revised sequence and annotation of the Rhodobacter sphaeroides 2.4.1 genome.
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An integrated map of genetic variation from 1,092 human genomes.
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Complete genome sequence of Treponema pallidum strain DAL-1.
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A non-human primate system for large-scale genetic studies of complex traits.
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A framework for human microbiome research.
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The 1000 Genomes Project: data management and community access.
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Genetic diversity in Treponema pallidum: implications for pathogenesis, evolution and molecular diagnostics of syphilis and yaws.
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The genome architecture of the Collaborative Cross mouse genetic reference population.
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Complete genome sequence of Enterococcus faecium strain TX16 and comparative genomic analysis of Enterococcus faecium genomes.
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The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle.
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The volatile microbiome.
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Diversity of human copy number variation and multicopy genes.
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A map of human genome variation from population-scale sequencing.
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A catalog of reference genomes from the human microbiome.
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High-throughput whole-genome sequencing to dissect the epidemiology of Acinetobacter baumannii isolates from a hospital outbreak.
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Genome remodelling in a basal-like breast cancer metastasis and xenograft.
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A SNP discovery method to assess variant allele probability from next-generation resequencing data.
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Characteristic male urine microbiomes associate with asymptomatic sexually transmitted infection.
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Enteric defensins are essential regulators of intestinal microbial ecology.
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Genome analysis of Treponema pallidum subsp. pallidum and subsp. pertenue strains: most of the genetic differences are localized in six regions.
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Genome sequencing reveals widespread virulence gene exchange among human Neisseria species.
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Simple sequence repeats in Helicobacter canadensis and their role in phase variable expression and C-terminal sequence switching.
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Targeted high-throughput DNA sequencing for gene discovery in retinitis pigmentosa.
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A collagen-binding adhesin, Acb, and ten other putative MSCRAMM and pilus family proteins of Streptococcus gallolyticus subsp. gallolyticus (Streptococcus bovis Group, biotype I).
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Genomics. Genome project standards in a new era of sequencing.
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Genome sequence of the emerging pathogen Helicobacter canadensis.
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VarScan: variant detection in massively parallel sequencing of individual and pooled samples.
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Macrolide treatment failure in a case of secondary syphilis: a novel A2059G mutation in the 23S rRNA gene of Treponema pallidum subsp. pallidum.
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Lineage-specific biology revealed by a finished genome assembly of the mouse.
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Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds.
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The genome sequence of taurine cattle: a window to ruminant biology and evolution.
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Larkin, Denis M; Reecy, James; Yang, Mary Q; Chen, Lin; Cheng, Ze; Chitko-McKown, Carol G; Liu, George E; Matukumalli, Lakshmi K; Song, Jiuzhou; Zhu, Bin; Bradley, Daniel G; Brinkman, Fiona S L; Lau, Lilian P L; Whiteside, Matthew D; Walker, Angela; Wheeler, Thomas T; Casey, Theresa; German, J Bruce; Lemay, Danielle G; Maqbool, Nauman J; Molenaar, Adrian J; Seo, Seongwon; Stothard, Paul; Baldwin, Cynthia L; Baxter, Rebecca; Brinkmeyer-Langford, Candice L; Brown, Wendy C; Childers, Christopher P; Connelley, Timothy; Ellis, Shirley A; Fritz, Krista; Glass, Elizabeth J; Herzig, Carolyn T A; Iivanainen, Antti; Lahmers, Kevin K; Bennett, Anna K; Dickens, C Michael; Gilbert, James G R; Hagen, Darren E; Salih, Hanni; Aerts, Jan; Caetano, Alexandre R; Dalrymple, Brian; Garcia, Jose Fernando; Gill, Clare A; Hiendleder, Stefan G; Memili, Erdogan; Spurlock, Diane; Williams, John L; Alexander, Lee; Brownstein, Michael J; Guan, Leluo; Holt, Robert A; Jones, Steven J M; Marra, Marco A; Moore, Richard; Moore, Stephen S; Roberts, Andy; Taniguchi, Masaaki; Waterman, Richard C; Chacko, Joseph; Chandrabose, Mimi M; Cree, Andy; Dao, Marvin Diep; Dinh, Huyen H; Gabisi, Ramatu Ayiesha; Hines, Sandra; Hume, Jennifer; Jhangiani, Shalini N; Joshi, Vandita; Kovar, Christie L; Lewis, Lora R; Liu, Yih-Shin; Lopez, John; Morgan, Margaret B; Nguyen, Ngoc Bich; Okwuonu, Geoffrey O; Ruiz, San Juana; Santibanez, Jireh; Wright, Rita A; Buhay, Christian; Ding, Yan; Dugan-Rocha, Shannon; Herdandez, Judith; Holder, Michael; Sabo, Aniko; Egan, Amy; Goodell, Jason; Wilczek-Boney, Katarzyna; Fowler, Gerald R; Hitchens, Matthew Edward; Lozado, Ryan J; Moen, Charles; Steffen, David; Warren, James T; Zhang, Jingkun; Chiu, Readman; Schein, Jacqueline E; Durbin, K James; Havlak, Paul; Jiang, Huaiyang; Liu, Yue; Qin, Xiang; Ren, Yanru; Shen, Yufeng; Song, Henry; Bell, Stephanie Nicole; Davis, Clay; Johnson, Angela Jolivet; Lee, Sandra; Nazareth, Lynne V; Patel, Bella Mayurkumar; Pu, Ling-Ling; Vattathil, Selina; Williams, Rex Lee; Curry, Stacey; Hamilton, Cerissa; Sodergren, Erica; Wheeler, David A; Barris, Wes; Bennett, Gary L; Eggen, André; Green, Ronnie D; Harhay, Gregory P; Hobbs, Matthew; Jann, Oliver; Keele, John W; Kent, Matthew P; Lien, Sigbjørn; McKay, Stephanie D; McWilliam, Sean; Ratnakumar, Abhirami; Schnabel, Robert D; Smith, Timothy; Snelling, Warren M; Sonstegard, Tad S; Stone, Roger T; Sugimoto, Yoshikazu; Takasuga, Akiko; Taylor, Jeremy F; Van Tassell, Curtis P; Macneil, Michael D; Abatepaulo, Antonio R R; Abbey, Colette A; Ahola, Virpi; Almeida, Iassudara G; Amadio, Ariel F; Anatriello, Elen; Bahadue, Suria M; Biase, Fernando H; Boldt, Clayton R; Carroll, Jeffery A; Carvalho, Wanessa A; Cervelatti, Eliane P; Chacko, Elsa; Chapin, Jennifer E; Cheng, Ye; Choi, Jungwoo; Colley, Adam J; de Campos, Tatiana A; De Donato, Marcos; Santos, Isabel K F de Miranda; de Oliveira, Carlo J F; Deobald, Heather; Devinoy, Eve; Donohue, Kaitlin E; Dovc, Peter; Eberlein, Annett; Fitzsimmons, Carolyn J; Franzin, Alessandra M; Garcia, Gustavo R; Genini, Sem; Gladney, Cody J; Grant, Jason R; Greaser, Marion L; Green, Jonathan A; Hadsell, Darryl L; Hakimov, Hatam A; Halgren, Rob; Harrow, Jennifer L; Hart, Elizabeth A; Hastings, Nicola; Hernandez, Marta; Hu, Zhi-Liang; Ingham, Aaron; Iso-Touru, Terhi; Jamis, Catherine; Jensen, Kirsty; Kapetis, Dimos; Kerr, Tovah; Khalil, Sari S; Khatib, Hasan; Kolbehdari, Davood; Kumar, Charu G; Kumar, Dinesh; Leach, Richard; Lee, Justin C-M; Li, Changxi; Logan, Krystin M; Malinverni, Roberto; Marques, Elisa; Martin, William F; Martins, Natalia F; Maruyama, Sandra R; Mazza, Raffaele; McLean, Kim L; Medrano, Juan F; Moreno, Barbara T; Moré, Daniela D; Muntean, Carl T; Nandakumar, Hari P; Nogueira, Marcelo F G; Olsaker, Ingrid; Pant, Sameer D; Panzitta, Francesca; Pastor, Rosemeire C P; Poli, Mario A; Poslusny, Nathan; Rachagani, Satyanarayana; Ranganathan, Shoba; Razpet, Andrej; Riggs, Penny K; Rincon, Gonzalo; Rodriguez-Osorio, Nelida; Rodriguez-Zas, Sandra L; Romero, Natasha E; Rosenwald, Anne; Sando, Lillian; Schmutz, Sheila M; Shen, Libing; Sherman, Laura; Southey, Bruce R; Lutzow, Ylva Strandberg; Sweedler, Jonathan V; Tammen, Imke; Telugu, Bhanu Prakash V L; Urbanski, Jennifer M; Utsunomiya, Yuri T; Verschoor, Chris P; Waardenberg, Ashley J; Wang, Zhiquan; Ward, Robert; Weikard, Rosemarie; Welsh, Thomas H; White, Stephen N; Wilming, Laurens G; Wunderlich, Kris R; Yang, Jianqi; Zhao, Feng-Qi Science (New York, N.Y.) 2009 Apr;324(5926):522-8
Bos taurus genome assembly.
Liu, Yue; Qin, Xiang; Song, Xing-Zhi Henry; Jiang, Huaiyang; Shen, Yufeng; Durbin, K James; Lien, Sigbjørn; Kent, Matthew Peter; Sodeland, Marte; Ren, Yanru; Zhang, Lan; Sodergren, Erica; Havlak, Paul; Worley, Kim C; Weinstock, George M; Gibbs, Richard A BMC genomics 2009 Jan;10180
Somatic mutations affect key pathways in lung adenocarcinoma.
Ding, Li; Getz, Gad; Wheeler, David A; Mardis, Elaine R; McLellan, Michael D; Cibulskis, Kristian; Sougnez, Carrie; Greulich, Heidi; Muzny, Donna M; Morgan, Margaret B; Fulton, Lucinda; Fulton, Robert S; Zhang, Qunyuan; Wendl, Michael C; Lawrence, Michael S; Larson, David E; Chen, Ken; Dooling, David J; Sabo, Aniko; Hawes, Alicia C; Shen, Hua; Jhangiani, Shalini N; Lewis, Lora R; Hall, Otis; Zhu, Yiming; Mathew, Tittu; Ren, Yanru; Yao, Jiqiang; Scherer, Steven E; Clerc, Kerstin; Metcalf, Ginger A; Ng, Brian; Milosavljevic, Aleksandar; Gonzalez-Garay, Manuel L; Osborne, John R; Meyer, Rick; Shi, Xiaoqi; Tang, Yuzhu; Koboldt, Daniel C; Lin, Ling; Abbott, Rachel; Miner, Tracie L; Pohl, Craig; Fewell, Ginger; Haipek, Carrie; Schmidt, Heather; Dunford-Shore, Brian H; Kraja, Aldi; Crosby, Seth D; Sawyer, Christopher S; Vickery, Tammi; Sander, Sacha; Robinson, Jody; Winckler, Wendy; Baldwin, Jennifer; Chirieac, Lucian R; Dutt, Amit; Fennell, Tim; Hanna, Megan; Johnson, Bruce E; Onofrio, Robert C; Thomas, Roman K; Tonon, Giovanni; Weir, Barbara A; Zhao, Xiaojun; Ziaugra, Liuda; Zody, Michael C; Giordano, Thomas; Orringer, Mark B; Roth, Jack A; Spitz, Margaret R; Wistuba, Ignacio I; Ozenberger, Bradley; Good, Peter J; Chang, Andrew C; Beer, David G; Watson, Mark A; Ladanyi, Marc; Broderick, Stephen; Yoshizawa, Akihiko; Travis, William D; Pao, William; Province, Michael A; Weinstock, George M; Varmus, Harold E; Gabriel, Stacey B; Lander, Eric S; Gibbs, Richard A; Meyerson, Matthew; Wilson, Richard K Nature 2008 Oct;455(7216):1069-75
A high-throughput percentage-of-binding strategy to measure binding energies in DNA-protein interactions: application to genome-scale site discovery.
Wang, Xiaohu; Gao, Haichun; Shen, Yufeng; Weinstock, George M; Zhou, Jizhong; Palzkill, Timothy Nucleic acids research 2008 Sep;36(15):4863-71
Large scale variation in Enterococcus faecalis illustrated by the genome analysis of strain OG1RF.
Bourgogne, Agathe; Garsin, Danielle A; Qin, Xiang; Singh, Kavindra V; Sillanpaa, Jouko; Yerrapragada, Shailaja; Ding, Yan; Dugan-Rocha, Shannon; Buhay, Christian; Shen, Hua; Chen, Guan; Williams, Gabrielle; Muzny, Donna; Maadani, Arash; Fox, Kristina A; Gioia, Jason; Chen, Lei; Shang, Yue; Arias, Cesar A; Nallapareddy, Sreedhar R; Zhao, Meng; Prakash, Vittal P; Chowdhury, Shahreen; Jiang, Huaiyang; Gibbs, Richard A; Murray, Barbara E; Highlander, Sarah K; Weinstock, George M Genome biology 2008 Jan;9(7):R110
Identification of novel and cross-species seroreactive proteins from Bacillus anthracis using a ligation-independent cloning-based, SOS-inducible expression system.
McWilliams, Brian D; Palzkill, Timothy; Weinstock, George M; Petrosino, Joseph F Microbial pathogenesis 53(5-6):250-8

Case Reports

Transferable vancomycin resistance in a community-associated MRSA lineage.
Rossi, Flávia; Diaz, Lorena; Wollam, Aye; Panesso, Diana; Zhou, Yanjiao; Rincon, Sandra; Narechania, Apurva; Xing, Galen; Di Gioia, Thais S R; Doi, André; Tran, Truc T; Reyes, Jinnethe; Munita, Jose M; Carvajal, Lina P; Hernandez-Roldan, Alejandra; Brandão, Denise; van der Heijden, Inneke Marie; Murray, Barbara E; Planet, Paul J; Weinstock, George M; Arias, Cesar A The New England journal of medicine 2014 Apr;370(16):1524-31

Editorials

Next-generation pathogen genomics.
Weinstock, George M; Peacock, Sharon J Genome biology 2014 Jan;15(11):528
A new era in the genomics of bacteria.
Dougan, Gordon; Weinstock, George M Current opinion in microbiology 2010 Oct;13(5):616-8

Erratums

Erratum for Arias et al., "A Prospective Cohort Multicenter Study of Molecular Epidemiology and Phylogenomics of Staphylococcus aureus Bacteremia in Nine Latin American Countries".
Arias, Cesar A; Reyes, Jinnethe; Carvajal, Lina Paola; Rincon, Sandra; Diaz, Lorena; Panesso, Diana; Ibarra, Gabriel; Rios, Rafael; Munita, Jose M; Salles, Mauro J; Alvarez-Moreno, Carlos; Labarca, Jaime; Garcia, Coralith; Luna, Carlos M; Mejia-Villatoro, Carlos; Zurita, Jeannete; Guzman-Blanco, Manuel; Rodriguez-Noriega, Eduardo; Narechania, Apurva; Rojas, Laura J; Planet, Paul J; Weinstock, George M; Gotuzzo, Eduardo; Seas, Carlos Antimicrobial agents and chemotherapy 2018 Mar;62(3):
Publisher Correction: Enterotypes in the landscape of gut microbial community composition.
Costea, Paul I; Hildebrand, Falk; Arumugam, Manimozhiyan; Bäckhed, Fredrik; Blaser, Martin J; Bushman, Frederic D; de Vos, Willem M; Ehrlich, S Dusko; Fraser, Claire M; Hattori, Masahira; Huttenhower, Curtis; Jeffery, Ian B; Knights, Dan; Lewis, James D; Ley, Ruth E; Ochman, Howard; O'Toole, Paul W; Quince, Christopher; Relman, David A; Shanahan, Fergus; Sunagawa, Shinichi; Wang, Jun; Weinstock, George M; Wu, Gary D; Zeller, Georg; Zhao, Liping; Raes, Jeroen; Knight, Rob; Bork, Peer Nature microbiology 2018 Mar;3(3):388
Erratum to: The real cost of sequencing: scaling computation to keep pace with data generation.
Muir, Paul; Li, Shantao; Lou, Shaoke; Wang, Daifeng; Spakowicz, Daniel J; Salichos, Leonidas; Zhang, Jing; Weinstock, George M; Isaacs, Farren; Rozowsky, Joel; Gerstein, Mark Genome biology 17(1):78

Reviews

Enterotypes in the landscape of gut microbial community composition.
Costea, Paul I; Hildebrand, Falk; Manimozhiyan, Arumugam; Bäckhed, Fredrik; Blaser, Martin J; Bushman, Frederic D; de Vos, Willem M; Ehrlich, S Dusko; Fraser, Claire M; Hattori, Masahira; Huttenhower, Curtis; Jeffery, Ian B; Knights, Dan; Lewis, James D; Ley, Ruth E; Ochman, Howard; O'Toole, Paul W; Quince, Christopher; Relman, David A; Shanahan, Fergus; Sunagawa, Shinichi; Wang, Jun; Weinstock, George M; Wu, Gary D; Zeller, Georg; Zhao, Liping; Raes, Jeroen; Knight, Rob; Bork, Peer Nature microbiology 2018 Jan;3(1):8-16
Lung microbiome in human immunodeficiency virus infection.
Twigg, Homer L; Weinstock, George M; Knox, Kenneth S Translational research : the journal of laboratory and clinical medicine 2016 Jul;17997-107
NIH working group report-using genomic information to guide weight management: From universal to precision treatment.
Bray, Molly S; Loos, Ruth J F; McCaffery, Jeanne M; Ling, Charlotte; Franks, Paul W; Weinstock, George M; Snyder, Michael P; Vassy, Jason L; Agurs-Collins, Tanya; Conference Working Group Obesity (Silver Spring, Md.) 2016 Jan;24(1):14-22
Making the Leap from Research Laboratory to Clinic: Challenges and Opportunities for Next-Generation Sequencing in Infectious Disease Diagnostics.
Goldberg, Brittany; Sichtig, Heike; Geyer, Chelsie; Ledeboer, Nathan; Weinstock, George M mBio 2015 Jan;6(6):e01888-15