Photo of George M. Weinstock, Ph.D.

George M. Weinstock, Ph.D.

Director, Microbial Genomics Professor, The Jackson Laboratory for Genomic Medicine
Academic Office Location:
The Jackson Laboratory for Genomic Medicine
10 Discovery Drive
Farmington, CT 06032
Phone: 860-837-2420

Genetics & Developmental Biology Graduate Program

Weinstock Lab Page

B.S.University of MichiganBiophysics
Ph.D.Massachusetts Institute of TechnologyGenetics and physical studies
OtherStanford University Medical SchoolBiochemistry

Post-Graduate Training
Undergraduate StudentTraining of undergraduate student, Fanny Chautin, 2003
Undergraduate StudentTraining of undergraduate student, Adam Quarles, 1985
Undergraduate StudentTraining of undergraduate student, Jennifer Reyna, 1992
Undergraduate StudentTraining of undergraduate student, Jonathan Mathy, 1995
Undergraduate StudentTraining of undergraduate student(s), Jeff Gralnick, Mack Kuo, Michelle Hibbard, 1996
Undergraduate StudentTraining of undergraduate student(s), Patricia Jimenez, Susan Abramski, 2000
Undergraduate StudentTraining of undergraduate student, Ying Xue (Zoey) Wang, 2013
Undergraduate StudentTraining of undergraduate student, Alexis Beraducci, 2004 - 2005

Name of Award/HonorAwarding Organization
FellowAmerican Association for the Advancement of Science
Chancellor's Entrepreneurship and Innovation AwardUniversity of Texas
Microbiology LecturerWaksman Foundation
Special CommendationUTHHSC Graduate School of Biomedical Sciences
President, Graduate FacultyUTHHSC
Vice-President, Graduate FacultyUTHHSC
FellowAmerican Academy of Microbiology
Senior FellowHuman Genome Program
Outstanding Teacher Award [John P. McGovern]University Texas Graduate School Biomed. Sci.
Dean's Teaching Excellence ListUniversity Texas Houston Health Sciences Center
FellowBank of America Giannini Foundation
FellowJane Coffin Childs Memorial Fund for Medical Research
Name & DescriptionCategoryRoleTypeScopeStart YearEnd Year
Chair, Genomics Innovation Network, Genome CANADAOtherExternalInternational2015
Executive Committee, Advanced Characterization Laboratory of U Conn Technology ParkProfessional/Scientific OrganizationUConn-StorrsState2015
Sci. Adv. Brd. [gMIND], Gut Microbiota In Neurodegenerative DiseasesProfessional/Scientific OrganizationExternalInternational2015
Infectious Disease Drug DiscoveryProfessional/Scientific OrganizationPartnershipUniversity2015
UBC-Genome [Canadian First Research Excellence Fund]Professional/Scientific OrganizationBC AdvisorExternalInternational2015
Advisory Committee Member; JAX Genome TechnologyAdvisory CommitteeOtherState2015
Expert Advisory Panel [COMPARE (EU)]Advisory CommitteeUniversity20142015
Chair, Steering Comm., American Academy Microbiology Colloquium NGS for Pathogen DetectionProfessional/Scientific OrganizationOtherNational20142015
Oversight Committee, Science & Technology Innovative Centres, Genome CANADAProfessional/Scientific OrganizationExternalInternational20142015
NSERC [Natural Sciences and Engineering Reseach Council of CANADA] Discovery Frontiers: Advancing Big Data Science in Genomics Research PanelProfessional/Scientific OrganizationExternalInternational2014
Advisory Group Member; JAX ITAdvisory CommitteeOtherState20142015
Sequenching Operations Member; JAX Innovation CouncilEducation CommitteeOtherState20142015
Pre/Postdoc committee memberEducation CommitteeOtherState20142015
Research Club Faculty Organizer; JGM GenomicsResearch CommitteeOtherState20142015
Committee Member; JAX mouse facility for pathogen researchResearch CommitteeOtherState20142015
Executive Committee Member, JGMEducation CommitteeOtherState20142015
Research Grant Committee Member; JAXResearch CommitteeOtherState20142015
JAX SAC and SAC-FACAdvisory CommitteeOtherState20142015
Search Committee Member; JAX-U. Conn. Computational biology faculty positionProfessional/Scientific OrganizationOtherState20142015
Search Committee Member; JAX-U. Conn. Statistical genetics faculty positionProfessional/Scientific OrganizationOtherState20142015
Search Committee Member; JAX-U. Conn. Microbiome Faculty positionProfessional/Scientific OrganizationOtherState20142015
Search Committee U. Conn. microbiome faculty positionProfessional/Scientific OrganizationUConn HealthUniversity20142015
Advisory Panel Member [Vervet Research Colony]; Wake Forest University Primate CenterAdvisory CommitteeOtherUniversity20132014
Advisory Board Member; Scientific OpGenAdvisory CommitteeMemberExternalNational20132014
Advisory Board; Scientific Real Time Genomics, New ZealandAdvisory CommitteeMemberExternalInternational20132014
Identifier; Global Microbial Task ForceProfessional/Scientific OrganizationMemberExternalInternational20132014
Inspiration Mars Personalized Medicine Team NSERC Discovery Frontiers: Advancing Big Data Science in Genomics Research Panel, Ottawa, CANADAProfessional/Scientific OrganizationMemberExternalInternational20132014
Task Force Member; Genome CANADA Disruptive TechnologyProfessional/Scientific OrganizationMemberExternalInternational20122013
Sci. Adv. Board EU METACARDIS projectProfessional/Scientific OrganizationMemberExternalInternational20122015
Next-generation sequencing workshop, Genentech, SFO, CAWorkshop/ConferenceMemberExternalNational2012
Scientific Advisory Board, Program for Health, Philippine Genome Center, University of the PhilippinesProfessional/Scientific OrganizationMemberExternalInternational20112015
Committee on Elections, American Academy of MicrobiologyProfessional/Scientific OrganizationChairExternalNational20112014
WHO Grand Challenges in Genomics for Public Health in Developing Countries, Expert PanelProfessional/Scientific OrganizationMemberExternalInternational2011
Genome Canada SIAC Bioinformatics Working GroupProfessional/Scientific OrganizationMemberExternalInternational20112012
White House briefing on Microbial ForensicsProfessional/Scientific OrganizationMemberExternalNational2011
NIH Workshop on Future of Human Microbiome Research, Bethesda, MDProfessional/Scientific OrganizationMemberExternalNational2011
Encyclopedia of GeneticsProfessional/Scientific OrganizationGenomics Section EditorExternalNational20102013
NHLBI Lung Human Microbiome Project Sequencing Committee, Bethesda, MDProfessional/Scientific OrganizationChairExternalNational20102011
NHLBI Lung Human Microbiome Project Publications Committee, Bethesda, MDProfessional/Scientific OrganizationChairExternalNational20102011
Board of Directors, Genome Canada; Program CommitteeProfessional/Scientific OrganizationChairmanExternalInternational20102015
Scientific Advisory Board, Michael Smith Genome Sciences Centre, Vancouver, CANADAProfessional/Scientific OrganizationMemberExternalInternational20102015
NHLBI Lung Human Microbiome Project Steering Committee, Bethesda, MDProfessional/Scientific OrganizationCo-ChairExternalNational20102015
Editorial Board, Genome Biology and EvolutionEditorial BoardMemberExternalNational20092013
Editorial Board, BMC-GenomicsEditorial BoardMemberExternalNational20052015
Editorial Board, Genome ResearchEditorial BoardMemberExternalNational20052015
Maize Genome Project External Advisory CommitteeAdvisory CommitteeChairExternalInternational20052008
Advisory Board, Genome BiologyAdvisory CommitteeMemberExternalNational20042015
Editorial Board, PlasmidEditorial BoardMemberExternalNational20022008
Journal of BacteriologyEditorial BoardMemberExternalNational19982004
National Center for Human Genome Research, National Institute of HealthStudy SectionMemberExternalNational1996
American Society for Microbiology, Microbial Genomics CommitteeProfessional/Scientific OrganizationMemberExternalNational1991
Scientific Advisory Board, Center for Comparative Animal Genetics, Institute for Biosciences, Texas A&M University, College Station, TXAdvisory CommitteeMemberExternalNational19891991
DNA and Cell BiologySenior EditorExternalNational19872006
Search Committee for Chairman of Genetics Department, M.D. Anderson Cancer Center, Houston, TXOtherMemberExternalNational1985
JAX Scholars Selection Committee MemberEducation CommitteeOtherState2014
American Academy of Microbiology (AAM)Professional/Scientific OrganizationMemberExternalNational
American Association for the Advancement of Science (AAAS)Professional/Scientific OrganizationMemberExternalNational
American Society for Biochemistry and Molecular Biology (ASBMB)Professional/Scientific OrganizationMemberExternalNational
American Society of Human Genetics (ASHG)Professional/Scientific OrganizationMemberExternalNational
American Society for Microbiology (ASM)Professional/Scientific OrganizationMemberExternalNational
Association for Computing Machinery (ACM)Professional/Scientific OrganizationMemberExternalNational
Federation of American Scientists (FAS)Professional/Scientific OrganizationExternalNational
Genetics Society of America (GSA)Professional/Scientific OrganizationExternalNational
Human Genome Organization International (HUGO)Professional/Scientific OrganizationMemberExternalInternational
Sigma XiOtherMemberNational
Current Opinion in Microbiology, volume 13, issue 5, Genomics sectionProfessional/Scientific OrganizationGuest EditorExternalNational2010
Guest Editor, Research in Microbiology, volume 151, Genomics issueEditorial BoardMemberExternalNational2000
American Society for Human Genetics Annual Meeting, session organizer (Baltimore)Professional/Scientific OrganizationMemberExternalNational2015
American Academy of Microbiology NGS Diagnostics WorkshopWorkshop/ConferenceMemberExternalNational2015
International Human Microbiome Consortium Conference (Luxembourg)Workshop/ConferenceMemberExternalInternational2015
Jackson Laboratory for Genomic Medicine Grand Opening Scientific SymposiumProfessional/Scientific OrganizationMemberExternalNational2014
Microbial Genomics Conference (Institut Pasteur)Workshop/ConferenceMemberExternalInternational2014
International Human Microbiome Consortium Conference (Hangzhou)Workshop/ConferenceMemberExternalInternational2013
Infectious Disease Genomics and Global Health (Sanger Institute, UK)Professional/Scientific OrganizationMemberExternalInternational2013
Infectious Disease Genomics and Global Health (Sanger Institute, UK) [not a duplicate] attended 2013 and 2012Professional/Scientific OrganizationMemberExternalInternational2012
Global Health Genomics (CSH-Asia, Suzhou, China)Professional/Scientific OrganizationMemberExternalInternational2012
International Human Microbiome Consortium Conference (Paris)Workshop/ConferenceMemberExternalInternational2012
Genome Canada Bioinformatics/Computational Biology Workshop (Toronto)Workshop/ConferenceMemberExternalInternational2011
State-of-the-Art Technology Colloquium, ASM Annual Meeting (New Orleans)Professional/Scientific OrganizationMemberExternalNational2011
International Human Microbiome Consortium Conference (Vancouver)Workshop/ConferenceMemberExternalInternational2011
Human Microbiome Conference (St. Louis)Workshop/ConferenceMemberExternalNational2010
Infectious Disease Genomics and Global Health (Sanger Institute, UK)Professional/Scientific OrganizationMemberExternalInternational2010
Institute of Electrical and Electronics Engineers (IEEE)OtherMemberExternalInternational

Accepting Lab Rotation Students: Summer 2022, Fall 2022, and Spring 2023

Journal Articles

  • Alterations in subgingival microbiota during full-fixed appliance orthodontic treatment-A prospective study.
    Chen, Isaac; Chung, Jennifer; Vella, Raven; Weinstock, George M; Zhou, Yanjiao; Jheon, Andrew H Orthodontics & craniofacial research 2021 Sep;
  • Introduction to mammalian genome special issue: the microbiome in human health and disease.
    Pavlovic, Guillaume; Seong, Je Kyung; Weinstock, George M Mammalian genome : official journal of the International Mammalian Genome Society 2021 Jun;
  • Circadian rhythms and the gut microbiome synchronize the host's metabolic response to diet.
    Gutierrez Lopez, Diana E; Lashinger, Laura M; Weinstock, George M; Bray, Molly S Cell metabolism 2021 May;33(5):873-887
  • Bifidobacterium bifidum strains synergize with immune checkpoint inhibitors to reduce tumour burden in mice.
    Lee, Se-Hoon; Cho, Sung-Yup; Yoon, Youngmin; Park, Changho; Sohn, Jinyoung; Jeong, Jin-Ju; Jeon, Bu-Nam; Jang, Mongjoo; An, Choa; Lee, Suro; Kim, Yun Yeon; Kim, Gihyeon; Kim, Sujeong; Kim, Yunjae; Lee, Gwang Bin; Lee, Eun Ju; Kim, Sang Gyun; Kim, Hong Sook; Kim, Yeongmin; Kim, Hyun; Yang, Hyun-Suk; Kim, Sarang; Kim, Seonggon; Chung, Hayung; Moon, Myeong Hee; Nam, Myung Hee; Kwon, Jee Young; Won, Sungho; Park, Joon-Suk; Weinstock, George M; Lee, Charles; Yoon, Kyoung Wan; Park, Hansoo Nature microbiology 2021 Mar;6(3):277-288
  • Supraglottic Lung Microbiome Taxa Are Associated with Pulmonary Abnormalities in an HIV Longitudinal Cohort.
    Zhou, Jin J; Zhai, Jing; Zhou, Hua; Chen, Yin; Guerra, Stefano; Robey, Ian; Weinstock, George M; Weinstock, Erica; Dong, Qunfeng; Knox, Kenneth S; Twigg, Homer L American journal of respiratory and critical care medicine 2020 Dec;202(12):1727-1731
  • Deciphering functional redundancy in the human microbiome.
    Tian, Liang; Wang, Xu-Wen; Wu, Ang-Kun; Fan, Yuhang; Friedman, Jonathan; Dahlin, Amber; Waldor, Matthew K; Weinstock, George M; Weiss, Scott T; Liu, Yang-Yu Nature communications 2020 Dec;11(1):6217
  • Genetic Basis of Aerobically Supported Voluntary Exercise: Results from a Selection Experiment with House Mice.
    Hillis, David A; Yadgary, Liran; Weinstock, George M; Pardo-Manuel de Villena, Fernando; Pomp, Daniel; Fowler, Alexandra S; Xu, Shizhong; Chan, Frank; Garland, Theodore Genetics 2020 Nov;216(3):781-804
  • Approaches for integrating heterogeneous RNA-seq data reveal cross-talk between microbes and genes in asthmatic patients.
    Spakowicz, Daniel; Lou, Shaoke; Barron, Brian; Gomez, Jose L; Li, Tianxiao; Liu, Qing; Grant, Nicole; Yan, Xiting; Hoyd, Rebecca; Weinstock, George; Chupp, Geoffrey L; Gerstein, Mark Genome biology 2020 Jun;21(1):150
  • Longitudinal Analysis of Serum Cytokine Levels and Gut Microbial Abundance Links IL-17/IL-22 with Clostridia and Insulin Sensitivity in Humans.
    Zhou, Xin; Johnson, Jethro S; Spakowicz, Daniel; Zhou, Wenyu; Zhou, Yanjiao; Sodergren, Erica; Snyder, Michael; Weinstock, George M Diabetes 2020 May;
  • Improving Characterization of Understudied Human Microbiomes Using Targeted Phylogenetics.
    Rosa, Bruce A; Mihindukulasuriya, Kathie; Hallsworth-Pepin, Kymberlie; Wollam, Aye; Martin, John; Snowden, Caroline; Dunne, William Michael; Weinstock, George M; Burnham, C A; Mitreva, Makedonka mSystems 2020 Feb;5(1):
  • Differences in Gut Microbiome in Hospitalized Immunocompetent vs. Immunocompromised Children, Including Those With Sickle Cell Disease.
    Mohandas, Sindhu; Soma, Vijaya L; Tran, Thi Dong Binh; Sodergren, Erica; Ambooken, Tresa; Goldman, David L; Weinstock, George; Herold, Betsy C Frontiers in pediatrics 2020 Jan;8583446
  • The upper-airway microbiota and loss of asthma control among asthmatic children.
    Zhou, Yanjiao; Jackson, Daniel; Bacharier, Leonard B; Mauger, David; Boushey, Homer; Castro, Mario; Durack, Juliana; Huang, Yvonne; Lemanske, Robert F; Storch, Gregory A; Weinstock, George M; Wylie, Kristine; Covar, Ronina; Fitzpatrick, Anne M; Phipatanakul, Wanda; Robison, Rachel G; Beigelman, Avraham Nature communications 2019 Dec;10(1):5714
  • Colon Cancer Prevention with Walnuts: A Longitudinal Study in Mice from the Perspective of a Gut Enterotype-like Cluster.
    Chen, Yanfei; Nakanishi, Masako; Bautista, Eddy J; Qendro, Veneta; Sodergren, Erica; Rosenberg, Daniel W; Weinstock, George M Cancer prevention research (Philadelphia, Pa.) 2019 Dec;
  • Characterization of Mucosal Dysbiosis of Early Colonic Neoplasia.
    Hong, Bo-Young; Ideta, Takayasu; Lemos, Bruno S; Igarashi, Yuichi; Tan, Yuliana; DiSiena, Michael; Mo, Allen; Birk, John W; Forouhar, Faripour; Devers, Thomas J; Weinstock, George M; Rosenberg, Daniel W NPJ Precision Oncology 2019 Nov;310
  • Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis.
    Johnson, Jethro S; Spakowicz, Daniel J; Hong, Bo-Young; Petersen, Lauren M; Demkowicz, Patrick; Chen, Lei; Leopold, Shana R; Hanson, Blake M; Agresta, Hanako O; Gerstein, Mark; Sodergren, Erica; Weinstock, George M Nature communications 2019 Nov;10(1):5029
  • Microbiome Signatures Associated with Steatohepatitis and Moderate to Severe Fibrosis in Children With Nonalcoholic Fatty Liver Disease.
    Schwimmer, Jeffrey B; Johnson, Jethro S; Angeles, Jorge E; Behling, Cynthia; Belt, Patricia H; Borecki, Ingrid; Bross, Craig; Durelle, Janis; Goyal, Nidhi P; Hamilton, Gavin; Holtz, Mary L; Lavine, Joel E; Mitreva, Makedonka; Newton, Kimberly P; Pan, Amy; Simpson, Pippa M; Sirlin, Claude B; Sodergren, Erica; Tyagi, Rahul; Yates, Katherine P; Weinstock, George; Salzman, Nita H Gastroenterology 2019 Jun;
  • A longitudinal big data approach for precision health.
    Schüssler-Fiorenza Rose, Sophia Miryam; Contrepois, Kévin; Moneghetti, Kegan J; Zhou, Wenyu; Mishra, Tejaswini; Mataraso, Samson; Dagan-Rosenfeld, Orit; Ganz, Ariel B; Dunn, Jessilyn; Hornburg, Daniel; Rego, Shannon; Perelman, Dalia; Ahadi, Sara; Sailani, M Reza; Zhou, Yanjiao; Leopold, Shana R; Chen, Jieming; Ashland, Melanie; Christle, Jeffrey W; Avina, Monika; Limcaoco, Patricia; Ruiz, Camilo; Tan, Marilyn; Butte, Atul J; Weinstock, George M; Slavich, George M; Sodergren, Erica; McLaughlin, Tracey L; Haddad, Francois; Snyder, Michael P Nature medicine 2019 May;25(5):792-804
  • Longitudinal multi-omics of host-microbe dynamics in prediabetes.
    Zhou, Wenyu; Sailani, M Reza; Contrepois, Kévin; Zhou, Yanjiao; Ahadi, Sara; Leopold, Shana R; Zhang, Martin J; Rao, Varsha; Avina, Monika; Mishra, Tejaswini; Johnson, Jethro; Lee-McMullen, Brittany; Chen, Songjie; Metwally, Ahmed A; Tran, Thi Dong Binh; Nguyen, Hoan; Zhou, Xin; Albright, Brandon; Hong, Bo-Young; Petersen, Lauren; Bautista, Eddy; Hanson, Blake; Chen, Lei; Spakowicz, Daniel; Bahmani, Amir; Salins, Denis; Leopold, Benjamin; Ashland, Melanie; Dagan-Rosenfeld, Orit; Rego, Shannon; Limcaoco, Patricia; Colbert, Elizabeth; Allister, Candice; Perelman, Dalia; Craig, Colleen; Wei, Eric; Chaib, Hassan; Hornburg, Daniel; Dunn, Jessilyn; Liang, Liang; Rose, Sophia Miryam Schüssler-Fiorenza; Kukurba, Kim; Piening, Brian; Rost, Hannes; Tse, David; McLaughlin, Tracey; Sodergren, Erica; Weinstock, George M; Snyder, Michael Nature 2019 May;569(7758):663-671
  • Chemotherapy-induced oral mucositis is associated with detrimental bacterial dysbiosis.
    Hong, Bo-Young; Sobue, Takanori; Choquette, Linda; Dupuy, Amanda K; Thompson, Angela; Burleson, Joseph A; Salner, Andrew L; Schauer, Peter K; Joshi, Pujan; Fox, Evan; Shin, Dong-Guk; Weinstock, George M; Strausbaugh, Linda D; Dongari-Bagtzoglou, Anna; Peterson, Douglas E; Diaz, Patricia I Microbiome 2019 Apr;7(1):66
  • Association of the Infant Gut Microbiome With Early Childhood Neurodevelopmental Outcomes: An Ancillary Study to the VDAART Randomized Clinical Trial.
    Sordillo, Joanne E; Korrick, Susan; Laranjo, Nancy; Carey, Vincent; Weinstock, George M; Gold, Diane R; O'Connor, George; Sandel, Megan; Bacharier, Leonard B; Beigelman, Avraham; Zeiger, Robert; Litonjua, Augusto A; Weiss, Scott T JAMA network open 2019 Mar;2(3):e190905
  • Rapid growth is a dominant predictor of hepcidin suppression and declining ferritin in Gambian infants.
    Armitage, Andrew E; Agbla, Schadrac C; Betts, Modupeh; Sise, Ebrima A; Jallow, Momodou W; Sambou, Ellen; Darboe, Bakary; Worwui, Archibald; Weinstock, George M; Antonio, Martin; Pasricha, Sant-Rayn; Prentice, Andrew M; Drakesmith, Hal; Darboe, Momodou K; Kwambana-Adams, Brenda Anna Haematologica 2019 Feb;
  • MSC: a metagenomic sequence classification algorithm.
    Saha, Subrata; Johnson, Jethro; Pal, Soumitra; Weinstock, George; Rajasekaran, Sanguthevar Bioinformatics (Oxford, England) 2019 Jan;
  • Symbiotic organs shaped by distinct modes of genome evolution in cephalopods.
    Belcaid, Mahdi; Casaburi, Giorgio; McAnulty, Sarah J; Schmidbaur, Hannah; Suria, Andrea M; Moriano-Gutierrez, Silvia; Pankey, M Sabrina; Oakley, Todd H; Kremer, Natacha; Koch, Eric J; Collins, Andrew J; Nguyen, Hoan; Lek, Sai; Goncharenko-Foster, Irina; Minx, Patrick; Sodergren, Erica; Weinstock, George; Rokhsar, Daniel S; McFall-Ngai, Margaret; Simakov, Oleg; Foster, Jamie S; Nyholm, Spencer V Proceedings of the National Academy of Sciences of the United States of America 2019 Jan;
  • Diet during Pregnancy and Infancy and the Infant Intestinal Microbiome.
    Savage, Jessica H; Lee-Sarwar, Kathleen A; Sordillo, Joanne E; Lange, Nancy E; Zhou, Yanjiao; O'Connor, George T; Sandel, Megan; Bacharier, Leonard B; Zeiger, Robert; Sodergren, Erica; Weinstock, George M; Gold, Diane R; Weiss, Scott T; Litonjua, Augusto A The Journal of pediatrics 2018 Aug;20347-54.e4
  • Intermittent Fasting Confers Protection in CNS Autoimmunity by Altering the Gut Microbiota.
    Cignarella, Francesca; Cantoni, Claudia; Ghezzi, Laura; Salter, Amber; Dorsett, Yair; Chen, Lei; Phillips, Daniel; Weinstock, George M; Fontana, Luigi; Cross, Anne H; Zhou, Yanjiao*; Piccio, Laura* Cell metabolism 2018 Jun;27(6):1222-1235.e6 *Co-Corresponding Authors
  • Oral microbiome in HIV-infected women: Shifts in the abundance of pathogenic and beneficial bacteria are associated with aging, HIV load, CD4 count, and ART.
    Lewy, Tyler; Hong, Bo-Young; Weiser, Barbara; Burger, Harold; Tremain, Andrew; Weinstock, George; Anastos, Kathryn; George, Michael AIDS research and human retroviruses 2018 May;
  • Extensive Gene Amplification as a Mechanism for Piperacillin-Tazobactam Resistance in Escherichia coli.
    Schechter, Lisa M; Creely, David P; Garner, Cherilyn D; Shortridge, Dee; Nguyen, Hoan; Chen, Lei; Hanson, Blake M; Sodergren, Erica; Weinstock, George M; Dunne, W Michael; van Belkum, Alex; Leopold, Shana R mBio 2018 Apr;9(2):
  • Meta-analysis of the lung microbiota in pulmonary tuberculosis.
    Hong, Bo-Young; Paulson, Joseph N; Stine, O Colin; Weinstock, George M; Cervantes, Jorge L Tuberculosis (Edinburgh, Scotland) 2018 Mar;109102-108
  • Integrative Personal Omics Profiles during Periods of Weight Gain and Loss.
    Piening, Brian D; Zhou, Wenyu; Contrepois, Kévin; Röst, Hannes; Gu Urban, Gucci Jijuan; Mishra, Tejaswini; Hanson, Blake M; Bautista, Eddy J; Leopold, Shana; Yeh, Christine Y; Spakowicz, Daniel; Banerjee, Imon; Chen, Cynthia; Kukurba, Kimberly; Perelman, Dalia; Craig, Colleen; Colbert, Elizabeth; Salins, Denis; Rego, Shannon; Lee, Sunjae; Zhang, Cheng; Wheeler, Jessica; Sailani, M Reza; Liang, Liang; Abbott, Charles; Gerstein, Mark; Mardinoglu, Adil; Smith, Ulf; Rubin, Daniel L; Pitteri, Sharon; Sodergren, Erica; McLaughlin, Tracey L; Weinstock, George M; Snyder, Michael P Cell systems 2018 Feb;6(2):157-170.e8
  • Proteomics and metabolomics for analysis of the dynamics of microbiota.
    Van Belkum, Alex; Broadwell, David; Lovern, Douglas; Petersen, Lauren; Weinstock, George; Dunne, W Michael Expert review of proteomics 2018 Feb;15(2):101-104
  • An Analysis of the Epidemic of Klebsiella pneumoniae Carbapenemase-Producing K. pneumoniae: Convergence of Two Evolutionary Mechanisms Creates the "Perfect Storm".
    Rojas, Laura J; Weinstock, George M; De La Cadena, Elsa; Diaz, Lorena; Rios, Rafael; Hanson, Blake M; Brown, Joseph S; Vats, Purva; Phillips, Daniel S; Nguyen, Hoan; Hujer, Kristine M; Correa, Adriana; Adams, Mark D; Perez, Federico; Sodergren, Erica; Narechania, Apurva; Planet, Paul J; Villegas, Maria V; Bonomo, Robert A; Arias, Cesar A The Journal of infectious diseases 2017 Dec;217(1):82-92
  • Obesity and obesogenic growth are both highly heritable and modified by diet in a nonhuman primate model, the African green monkey (Chlorocebus aethiops sabaeus).
    Schmitt, C A; Service, S K; Jasinska, A J; Dyer, T D; Jorgensen, M J; Cantor, R M; Weinstock, G M; Blangero, J; Kaplan, J R; Freimer, N B International journal of obesity (2005) 2017 Dec;42765-774
  • Ancient hybridization and strong adaptation to viruses across African vervet monkey populations.
    Svardal, Hannes; Jasinska, Anna J; Apetrei, Cristian; Coppola, Giovanni; Huang, Yu; Schmitt, Christopher A; Jacquelin, Beatrice; Ramensky, Vasily; Müller-Trutwin, Michaela; Antonio, Martin; Weinstock, George; Grobler, J Paul; Dewar, Ken; Wilson, Richard K; Turner, Trudy R; Warren, Wesley C; Freimer, Nelson B; Nordborg, Magnus Nature genetics 2017 Oct;491705-1713
  • Genetic variation and gene expression across multiple tissues and developmental stages in a nonhuman primate.
    Jasinska, Anna J; Zelaya, Ivette; Service, Susan K; Peterson, Christine B; Cantor, Rita M; Choi, Oi-Wa; DeYoung, Joseph; Eskin, Eleazar; Fairbanks, Lynn A; Fears, Scott; Furterer, Allison E; Huang, Yu S; Ramensky, Vasily; Schmitt, Christopher A; Svardal, Hannes; Jorgensen, Matthew J; Kaplan, Jay R; Villar, Diego; Aken, Bronwen L; Flicek, Paul; Nag, Rishi; Wong, Emily S; Blangero, John; Dyer, Thomas D; Bogomolov, Marina; Benjamini, Yoav; Weinstock, George M; Dewar, Ken; Sabatti, Chiara; Wilson, Richard K; Jentsch, J David; Warren, Wesley; Coppola, Giovanni; Woods, Roger P; Freimer, Nelson B Nature genetics 2017 Oct;491714-1721
  • Rapid replacement by non-vaccine pneumococcal serotypes may mitigate the impact of the pneumococcal conjugate vaccine on nasopharyngeal bacterial ecology.
    Kwambana-Adams, Brenda; Hanson, Blake; Worwui, Archibald; Agbla, Schadrac; Foster-Nyarko, Ebenezer; Ceesay, Fatima; Ebruke, Chinelo; Egere, Uzochukwu; Zhou, Yanjiao; Ndukum, Maze; Sodergren, Erica; Barer, Michael; Adegbola, Richard; Weinstock, George; Antonio, Martin Scientific reports 2017 Aug;7(1):8127
  • Community characteristics of the gut microbiomes of competitive cyclists.
    Petersen, Lauren M; Bautista, Eddy J; Nguyen, Hoan; Hanson, Blake M; Chen, Lei; Lek, Sai H; Sodergren, Erica; Weinstock, George M Microbiome 2017 Aug;5(1):98
  • Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
    Bowers, Robert M; Kyrpides, Nikos C; Stepanauskas, Ramunas; Harmon-Smith, Miranda; Doud, Devin; Reddy, T B K; Schulz, Frederik; Jarett, Jessica; Rivers, Adam R; Eloe-Fadrosh, Emiley A; Tringe, Susannah G; Ivanova, Natalia N; Copeland, Alex; Clum, Alicia; Becraft, Eric D; Malmstrom, Rex R; Birren, Bruce; Podar, Mircea; Bork, Peer; Weinstock, George M; Garrity, George M; Dodsworth, Jeremy A; Yooseph, Shibu; Sutton, Granger; Glöckner, Frank O; Gilbert, Jack A; Nelson, William C; Hallam, Steven J; Jungbluth, Sean P; Ettema, Thijs J G; Tighe, Scott; Konstantinidis, Konstantinos T; Liu, Wen-Tso; Baker, Brett J; Rattei, Thomas; Eisen, Jonathan A; Hedlund, Brian; McMahon, Katherine D; Fierer, Noah; Knight, Rob; Finn, Rob; Cochrane, Guy; Karsch-Mizrachi, Ilene; Tyson, Gene W; Rinke, Christian; Genome Standards Consortium; Lapidus, Alla; Meyer, Folker; Yilmaz, Pelin; Parks, Donovan H; Eren, A M; Schriml, Lynn; Banfield, Jillian F; Hugenholtz, Philip; Woyke, Tanja Nature biotechnology 2017 Aug;35(8):725-731
  • Molecular Epidemiology and Phylogenomics of Staphylococcus aureus Bacteremia in Latin-America: A Prospective Cohort Multicenter Study in Nine Countries.
    Arias, Cesar A; Reyes, Jinnethe; Carvajal, Lina Paola; Rincon, Sandra; Diaz, Lorena; Panesso, Diana; Ibarra, Gabriel; Rios, Rafael; Munita, Jose M; Salles, Mauro J; Alvarez-Moreno, Carlos; Labarca, Jaime; Garcia, Coralith; Luna, Carlos M; Mejia-Villatoro, Carlos; Zurita, Jeannete; Guzman-Blanco, Manuel; Rodriguez-Noriega, Eduardo; Narechania, Apurva; Rojas, Laura J; Planet, Paul J; Weinstock, George M; Gotuzzo, Eduardo; Seas, Carlos Antimicrobial agents and chemotherapy 2017 Jul;61
  • A prospective microbiome-wide association study of food sensitization and food allergy in early childhood.
    Savage, Jessica H; Lee-Sarwar, Kathleen A; Sordillo, Joanne; Bunyavanich, Supinda; Zhou, Yanjiao; O'Connor, George; Sandel, Megan; Bacharier, Leonard; Zeiger, Robert; Sodergren, Erica; Weinstock, George M; Gold, Diane R; Weiss, Scott T; Litonjua, Augusto A Allergy 2017 Jun;73145-152
  • Validation of Metagenomic Next-Generation Sequencing Tests for Universal Pathogen Detection.
    Schlaberg, Robert; Chiu, Charles Y; Miller, Steve; Procop, Gary W; Weinstock, George; Professional Practice Committee and Committee on Laboratory Practices of the American Society for Microbiology; Microbiology Resource Committee of the College of American Pathologists Archives of pathology & laboratory medicine 2017 Jun;141(6):776-786
  • Ceftaroline-Resistant, Daptomycin-Tolerant, and Heterogeneous Vancomycin-Intermediate Methicillin-Resistant Staphylococcus aureus Causing Infective Endocarditis.
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    Bartley, Jenna M; Zhou, Xin; Kuchel, George A; Weinstock, George M; Haynes, Laura Frontiers in immunology 2017 Jan;81164
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    Kwambana-Adams, Brenda A; Laxton, Claire S; Foster-Nyarko, Ebenezer; Laxton, Claire S; Weinstock, George; Antonio, Martin The Pediatric infectious disease journal 2017 Jan;36(1):123-124
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    Nakanishi, Masako; Chen, Yanfei; Qendro, Veneta; Miyamoto, Shingo; Weinstock, Erica; Weinstock, George M; Rosenberg, Daniel W Cancer prevention research (Philadelphia, Pa.) 2016 May;9692-703
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    Warner, Barbara B; Deych, Elena; Zhou, Yanjiao; Hall-Moore, Carla; Weinstock, George M; Sodergren, Erica; Shaikh, Nurmohammad; Hoffmann, Julie A; Linneman, Laura A; Hamvas, Aaron; Khanna, Geetika; Rouggly-Nickless, Lucina C; Ndao, I Malick; Shands, Berkley A; Escobedo, Marilyn; Sullivan, Janice E; Radmacher, Paula G; Shannon, William D; Tarr, Phillip I Lancet (London, England) 2016 May;387(10031):1928-36
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    Rylance, Jamie; Kankwatira, Anstead; Nelson, David E; Toh, Evelyn; Day, Richard B; Lin, Huaiying; Gao, Xiang; Dong, Qunfeng; Sodergren, Erica; Weinstock, George M; Heyderman, Robert S; Twigg, Homer L; Gordon, Stephen B BMC microbiology 2016 Jan;16(1):182
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    McGeachie, Michael J; Sordillo, Joanne E; Gibson, Travis; Weinstock, George M; Liu, Yang-Yu; Gold, Diane R; Weiss, Scott T; Litonjua, Augusto Scientific reports 2016 Jan;620359
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    Muir, Paul; Li, Shantao; Lou, Shaoke; Wang, Daifeng; Spakowicz, Daniel J; Salichos, Leonidas; Zhang, Jing; Weinstock, George M; Isaacs, Farren; Rozowsky, Joel; Gerstein, Mark Genome biology 2016 Jan;17(1):53
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  • A Glimpse of Microbial Power in Preventive Medicine.
    Weinstock, George M JAMA pediatrics 2015 Nov;17011
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    Rodriguez, Marcela; Hogan, Patrick G; Satola, Sarah W; Crispell, Emily; Wylie, Todd; Gao, Hongyu; Sodergren, Erica; Weinstock, George M; Burnham, Carey-Ann D; Fritz, Stephanie A Medicine 2015 Sep;94(37):e1534
  • Multi-center Comparison of Lung and Oral Microbiomes of HIV-infected and HIV-uninfected Individuals.
    Beck, James M; Schloss, Patrick D; Venkataraman, Arvind; Twigg Iii, Homer; Jablonski, Kathleen A; Bushman, Frederic D; Campbell, Thomas B; Charlson, Emily S; Collman, Ronald G; Crothers, Kristina; Curtis, Jeffrey L; Drews, Kimberly L; Flores, Sonia C; Fontenot, Andrew P; Foulkes, Mary A; Frank, Ian; Ghedin, Elodie; Huang, Laurence; Lynch, Susan V; Morris, Alison; Palmer, Brent E; Schmidt, Thomas M; Sodergren, Erica; Weinstock, George M; Young, Vincent B American journal of respiratory and critical care medicine 2015 Aug;1921335-44
  • Identification of functional variants for cleft lip with or without cleft palate in or near PAX7, FGFR2, and NOG by targeted sequencing of GWAS loci.
    Leslie, Elizabeth J; Taub, Margaret A; Liu, Huan; Steinberg, Karyn Meltz; Koboldt, Daniel C; Zhang, Qunyuan; Carlson, Jenna C; Hetmanski, Jacqueline B; Wang, Hang; Larson, David E; Fulton, Robert S; Kousa, Youssef A; Fakhouri, Walid D; Naji, Ali; Ruczinski, Ingo; Begum, Ferdouse; Parker, Margaret M; Busch, Tamara; Standley, Jennifer; Rigdon, Jennifer; Hecht, Jacqueline T; Scott, Alan F; Wehby, George L; Christensen, Kaare; Czeizel, Andrew E; Deleyiannis, Frederic W-B; Schutte, Brian C; Wilson, Richard K; Cornell, Robert A; Lidral, Andrew C; Weinstock, George M; Beaty, Terri H; Marazita, Mary L; Murray, Jeffrey C American journal of human genetics 2015 Feb;96(3):397-411
  • A multi-megabase copy number gain causes maternal transmission ratio distortion on mouse chromosome 2.
    Didion, John P; Morgan, Andrew P; Clayshulte, Amelia M-F; Mcmullan, Rachel C; Yadgary, Liran; Petkov, Petko M; Bell, Timothy A; Gatti, Daniel M; Crowley, James J; Hua, Kunjie; Aylor, David L; Bai, Ling; Calaway, Mark; Chesler, Elissa J; French, John E; Geiger, Thomas R; Gooch, Terry J; Garland, Theodore; Harrill, Alison H; Hunter, Kent; McMillan, Leonard; Holt, Matt; Miller, Darla R; O'Brien, Deborah A; Paigen, Kenneth; Pan, Wenqi; Rowe, Lucy B; Shaw, Ginger D; Simecek, Petr; Sullivan, Patrick F; Svenson, Karen L; Weinstock, George M; Threadgill, David W; Pomp, Daniel; Churchill, Gary A; Pardo-Manuel de Villena, Fernando PLoS genetics 2015 Feb;11(2):e1004850
  • Selection of models for the analysis of risk-factor trees: leveraging biological knowledge to mine large sets of risk factors with application to microbiome data.
    Zhang, Qunyuan; Abel, Haley; Wells, Alan; Lenzini, Petra; Gomez, Felicia; Province, Michael A; Templeton, Alan A; Weinstock, George M; Salzman, Nita H; Borecki, Ingrid B Bioinformatics (Oxford, England) 2015 Jan;31(10):1607-13
  • Dynamic changes in the subgingival microbiome and their potential for diagnosis and prognosis of periodontitis.
    Shi, Baochen; Chang, Michaela; Martin, John; Mitreva, Makedonka; Lux, Renate; Klokkevold, Perry; Sodergren, Erica; Weinstock, George M; Haake, Susan K; Li, Huiying mBio 2015 Jan;6(1):e01926-14
  • Longitudinal analysis of the premature infant intestinal microbiome prior to necrotizing enterocolitis: a case-control study.
    Zhou, Yanjiao; Shan, Gururaj; Sodergren, Erica; Weinstock, George; Walker, W Allan; Gregory, Katherine E PloS one 2015 Jan;10(3):e0118632
  • Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment.
    Nobel, Yael R; Cox, Laura M; Kirigin, Francis F; Bokulich, Nicholas A; Yamanishi, Shingo; Teitler, Isabel; Chung, Jennifer; Sohn, Jiho; Barber, Cecily M; Goldfarb, David S; Raju, Kartik; Abubucker, Sahar; Zhou, Yanjiao; Ruiz, Victoria E; Li, Huilin; Mitreva, Makedonka; Alekseyenko, Alexander V; Weinstock, George M; Sodergren, Erica; Blaser, Martin J Nature communications 2015 Jan;67486
  • Sequencing strategies and characterization of 721 vervet monkey genomes for future genetic analyses of medically relevant traits.
    Huang, Yu S; Ramensky, Vasily; Service, Susan K; Jasinska, Anna J; Jung, Yoon; Choi, Oi-Wa; Cantor, Rita M; Juretic, Nikoleta; Wasserscheid, Jessica; Kaplan, Jay R; Jorgensen, Matthew J; Dyer, Thomas D; Dewar, Ken; Blangero, John; Wilson, Richard K; Warren, Wesley; Weinstock, George M; Freimer, Nelson B BMC biology 2015 Jan;1341
  • Small bowel resection induces long-term changes in the enteric microbiota of mice.
    Sommovilla, J; Zhou, Y; Sun, R C; Choi, P M; Diaz-Miron, J; Shaikh, N; Sodergren, E; Warner, B B; Weinstock, G M; Tarr, P I; Warner, B W Journal of gastrointestinal surgery : official journal of the Society for Surgery of the Alimentary Tract 2015 Jan;19(1):56-64; discussion 64
  • The transcriptional profile of coronary arteritis in Kawasaki disease.
    Rowley, Anne H; Wylie, Kristine M; Kim, Kwang-Youn A; Pink, Adam J; Yang, Amy; Reindel, Rebecca; Baker, Susan C; Shulman, Stanford T; Orenstein, Jan M; Lingen, Mark W; Weinstock, George M; Wylie, Todd N BMC genomics 2015 Jan;16(1):1076
  • HCoDES reveals chromosomal DNA end structures with single-nucleotide resolution.
    Dorsett, Yair; Zhou, Yanjiao; Tubbs, Anthony T; Chen, Bo-Ruei; Purman, Caitlin; Lee, Baeck-Seung; George, Rosmy; Bredemeyer, Andrea L; Zhao, Jiang-Yang; Sodergen, Erica; Weinstock, George M; Han, Nathan D; Reyes, Alejandro; Oltz, Eugene M; Dorsett, Dale; Misulovin, Ziva; Payton, Jacqueline E; Sleckman, Barry P Molecular cell 2014 Dec;56(6):808-18
  • High-resolution genetic mapping in the diversity outbred mouse population identifies Apobec1 as a candidate gene for atherosclerosis.
    Smallwood, Tangi L; Gatti, Daniel M; Quizon, Pamela; Weinstock, George M; Jung, Kuo-Chen; Zhao, Liyang; Hua, Kunjie; Pomp, Daniel; Bennett, Brian J G3 (Bethesda, Md.) 2014 Dec;4(12):2353-63
  • Phenotypic and genotypic analysis of Clostridium difficile isolates: a single-center study.
    Zhou, Yanjiao; Burnham, Carey-Ann D; Hink, Tiffany; Chen, Lei; Shaikh, Nurmohammad; Wollam, Aye; Sodergren, Erica; Weinstock, George M; Tarr, Phillip I; Dubberke, Erik R Journal of clinical microbiology 2014 Dec;52(12):4260-6
  • A dominant mutation in hexokinase 1 (HK1) causes retinitis pigmentosa.
    Sullivan, Lori S; Koboldt, Daniel C; Bowne, Sara J; Lang, Steven; Blanton, Susan H; Cadena, Elizabeth; Avery, Cheryl E; Lewis, Richard A; Webb-Jones, Kaylie; Wheaton, Dianna H; Birch, David G; Coussa, Razck; Ren, Huanan; Lopez, Irma; Chakarova, Christina; Koenekoop, Robert K; Garcia, Charles A; Fulton, Robert S; Wilson, Richard K; Weinstock, George M; Daiger, Stephen P Investigative ophthalmology & visual science 2014 Nov;55(11):7147-58
  • Whole genome sequence of the Treponema pallidum subsp. endemicum strain Bosnia A: the genome is related to yaws treponemes but contains few loci similar to syphilis treponemes.
    Staudová, Barbora; Strouhal, Michal; Zobaníková, Marie; Cejková, Darina; Fulton, Lucinda L; Chen, Lei; Giacani, Lorenzo; Centurion-Lara, Arturo; Bruisten, Sylvia M; Sodergren, Erica; Weinstock, George M; Smajs, David PLoS neglected tropical diseases 2014 Nov;8(11):e3261
  • The Integrative Human Microbiome Project: dynamic analysis of microbiome-host omics profiles during periods of human health and disease.
    Proctor, Lita M; Sechi, Salvatore; DiGiacomo, Nicholas D; Fettweis, Jennifer M; Jefferson, Kimberly K; Strauss, Jerome F; Rubens, Craig E; Brooks, J Paul; Girerd, Phillipe P; Huang, Bernice; Serrano, Myrna G; Sheth, Nihar U; Vivadelli, Stephany C; Asmussen, Niels C; Borzelleca, Joseph F; Bradley, Steven P; Brooks, Jamie L; Chalfant, Charles E; Dickinson, Molly R; Drake, Jennifer I; Edwards, David J; El Khoury, Joseph; Glascock, Abigail L; Gravett, Michael G; Hendricks-Muñoz, Karen D; Koparde, Vishal N; Lanni, Susan M; Lara, Ana M; Lee, Vladimir; Matveyev, Andrey V; Ozaki, Luiz V; Sexton, Amber S; Shyu, Conrad; Tran, Ann; Uetz, Peter H; Wijesinghe, Dayanjan S; Wijesooriya, Niran R; Xu, Jie; Buck, Gregory A; Huttenhower, Curtis; Gevers, Dirk; Sirota-Madi, Alexandra; Bayer, Keith; Braun, Jonathan; Denson, Lee A; Jansson, Janet K; Knight, Rob; Kugathasan, Subra; McGovern, Dermot P B; Petrosino, Joseph F; Stappenbeck, Thaddeus S; Birren, Bruce W; Clish, Clary B; Gonzalez, Antonio; Graeber, Thomas G; Lake, Kathleen; Li, Xiaoxiao; Loo, Joseph; McDonald, Daniel; Nicol, Rob; Nusbaum, Chad; Prasad, Mahadev; Ryu, Stacy; Sauk, Jenny; Schwager, Randall; Sturgeon, Holly; Tas, Neslihan; VanDussen, Kelli L; Wilson, Robin G; Yassour, Moran; Xavier, Ramnik J; Weinstock, George; McLaughlin, Tracey; Bernstein, Jonathan A; Zhou, Wenyu; Piening, Brian D; Kukurba, Kimberly; Allister, Candice; Butte, Atul J; Boyle, Sean M; Cao, Lulu; Chen, Rui; Contrepois, Kevin; Cooper, Breanna; Craig, Colleen; Datta, Somalee; Fan-Minogue, Hua; Gu, Gucci J; Hanson, Blake; Jiang, Lihua; Lek, Sai; Leopold, Benjamin; Leopold, Shana; Li-Pook-Than, Jennifer; Mitra, Siddhartha; Rego, Shannon; Sailani, M Reza; Salins, Denis; Sodergren, Erica; Soto Pérez, Paola; Takahashi, Shinichi; Snyder, Michael P; White, Owen; Mahurkar, Anup; Gwinn Giglio, Michelle Cell host & microbe 2014 Sep;16(3):276-89
  • CcpA is important for growth and virulence of Enterococcus faecium.
    Somarajan, Sudha R; Roh, Jung H; Singh, Kavindra V; Weinstock, George M; Murray, Barbara E Infection and immunity 2014 Sep;82(9):3580-7
  • Characterization of mutations in the PAS domain of the EvgS sensor kinase selected by laboratory evolution for acid resistance in Escherichia coli.
    Johnson, Matthew D; Bell, James; Clarke, Kim; Chandler, Rachel; Pathak, Prachi; Xia, Yandong; Marshall, Robert L; Weinstock, George M; Loman, Nicholas J; Winn, Peter J; Lund, Peter A Molecular microbiology 2014 Sep;93(5):911-27
  • Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages.
    Deng, Xiangyu; Desai, Prerak T; den Bakker, Henk C; Mikoleit, Matthew; Tolar, Beth; Trees, Eija; Hendriksen, Rene S; Frye, Jonathan G; Porwollik, Steffen; Weimer, Bart C; Wiedmann, Martin; Weinstock, George M; Fields, Patricia I; McClelland, Michael Emerging infectious diseases 2014 Sep;20(9):1481-9
  • Patterned progression of bacterial populations in the premature infant gut.
    La Rosa, Patricio S; Warner, Barbara B; Zhou, Yanjiao; Weinstock, George M; Sodergren, Erica; Hall-Moore, Carla M; Stevens, Harold J; Bennett, William E; Shaikh, Nurmohammad; Linneman, Laura A; Hoffmann, Julie A; Hamvas, Aaron; Deych, Elena; Shands, Berkley A; Shannon, William D; Tarr, Phillip I Proceedings of the National Academy of Sciences of the United States of America 2014 Aug;111(34):12522-7
  • Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains.
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  • The common marmoset genome provides insight into primate biology and evolution.
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  • Whole-genome analyses of Enterococcus faecium isolates with diverse daptomycin MICs.
    Diaz, Lorena; Tran, Truc T; Munita, Jose M; Miller, William R; Rincon, Sandra; Carvajal, Lina P; Wollam, Aye; Reyes, Jinnethe; Panesso, Diana; Rojas, Natalia L; Shamoo, Yousif; Murray, Barbara E; Weinstock, George M; Arias, Cesar A Antimicrobial agents and chemotherapy 2014 Aug;58(8):4527-34
  • Sepsis from the gut: the enteric habitat of bacteria that cause late-onset neonatal bloodstream infections.
    Carl, Mike A; Ndao, I Malick; Springman, A Cody; Manning, Shannon D; Johnson, James R; Johnston, Brian D; Burnham, Carey-Ann D; Weinstock, Erica Sodergren; Weinstock, George M; Wylie, Todd N; Mitreva, Makedonka; Abubucker, Sahar; Zhou, Yanjiao; Stevens, Harold J; Hall-Moore, Carla; Julian, Samuel; Shaikh, Nurmohammad; Warner, Barbara B; Tarr, Phillip I Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2014 May;58(9):1211-8
  • Phylogenomics and the dynamic genome evolution of the genus Streptococcus.
    Richards, Vincent P; Palmer, Sara R; Pavinski Bitar, Paulina D; Qin, Xiang; Weinstock, George M; Highlander, Sarah K; Town, Christopher D; Burne, Robert A; Stanhope, Michael J Genome biology and evolution 2014 Apr;6(4):741-53
  • The relationships between environmental bacterial exposure, airway bacterial colonization, and asthma.
    Beigelman, Avraham; Weinstock, George M; Bacharier, Leonard B Current opinion in allergy and clinical immunology 2014 Apr;14(2):137-42
  • Exome-based mapping and variant prioritization for inherited Mendelian disorders.
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  • Application of next-generation sequencing to identify genes and mutations causing autosomal dominant retinitis pigmentosa (adRP).
    Daiger, Stephen P; Bowne, Sara J; Sullivan, Lori S; Blanton, Susan H; Weinstock, George M; Koboldt, Daniel C; Fulton, Robert S; Larsen, David; Humphries, Peter; Humphries, Marian M; Pierce, Eric A; Chen, Rui; Li, Yumei Advances in experimental medicine and biology 2014 Jan;801123-9
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    Liu, Yan; Wu, Bin; Weinstock, George; Walker, David H; Yu, Xue-Jie PloS one 2014 Jan;9(11):e113285
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  • Plant-associated symbiotic Burkholderia species lack hallmark strategies required in mammalian pathogenesis.
    Angus, Annette A; Agapakis, Christina M; Fong, Stephanie; Yerrapragada, Shailaja; Estrada-de los Santos, Paulina; Yang, Paul; Song, Nannie; Kano, Stephanie; Caballero-Mellado, Jésus; de Faria, Sergio M; Dakora, Felix D; Weinstock, George; Hirsch, Ann M PloS one 2014 Jan;9(1):e83779
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  • Precise dissection of an Escherichia coli O157:H7 outbreak by single nucleotide polymorphism analysis.
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  • Propionibacterium acnes strain populations in the human skin microbiome associated with acne.
    Fitz-Gibbon, Sorel; Tomida, Shuta; Chiu, Bor-Han; Nguyen, Lin; Du, Christine; Liu, Minghsun; Elashoff, David; Erfe, Marie C; Loncaric, Anya; Kim, Jenny; Modlin, Robert L; Miller, Jeff F; Sodergren, Erica; Craft, Noah; Weinstock, George M; Li, Huiying The Journal of investigative dermatology 2013 Sep;133(9):2152-60
  • Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations.
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  • Virome genomics: a tool for defining the human virome.
    Wylie, Kristine M; Weinstock, George M; Storch, Gregory A Current opinion in microbiology 2013 Aug;16(4):479-84
  • Use of bronchoalveolar lavage to assess the respiratory microbiome: signal in the noise.
    Twigg, Homer L; Morris, Alison; Ghedin, Elodie; Curtis, Jeffrey L; Huffnagle, Gary B; Crothers, Kristina; Campbell, Thomas B; Flores, Sonia C; Fontenot, Andrew P; Beck, James M; Huang, Laurence; Lynch, Susan; Knox, Kenneth S; Weinstock, George The Lancet. Respiratory medicine 2013 Jul;1(5):354-6
  • Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens.
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  • Comparison of the respiratory microbiome in healthy nonsmokers and smokers.
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  • Widespread colonization of the lung by Tropheryma whipplei in HIV infection.
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  • Quantitation and composition of cutaneous microbiota in diabetic and nondiabetic men.
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  • Structure of rrn operons in pathogenic non-cultivable treponemes: sequence but not genomic position of intergenic spacers correlates with classification of Treponema pallidum and Treponema paraluiscuniculi strains.
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  • Biogeography of the ecosystems of the healthy human body.
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  • Epidemiological investigation of Pseudomonas aeruginosa isolates from a six-year-long hospital outbreak using high-throughput whole genome sequencing.
    Snyder, L A; Loman, N J; Faraj, L A; Levi, K; Weinstock, G; Boswell, T C; Pallen, M J; Ala'Aldeen, D A Euro surveillance : bulletin Européen sur les maladies transmissibles = European communicable disease bulletin 2013 Jan;18(42):
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    Desai, Prerak T; Porwollik, Steffen; Long, Fred; Cheng, Pui; Wollam, Aye; Bhonagiri-Palsikar, Veena; Hallsworth-Pepin, Kymberlie; Clifton, Sandra W; Weinstock, George M; McClelland, Michael mBio 2013 Jan;4(2):
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    Tomida, Shuta; Nguyen, Lin; Chiu, Bor-Han; Liu, Jared; Sodergren, Erica; Weinstock, George M; Li, Huiying mBio 2013 Jan;4(3):e00003-13
  • Resequencing of Treponema pallidum ssp. pallidum strains Nichols and SS14: correction of sequencing errors resulted in increased separation of syphilis treponeme subclusters.
    Petrošová, Helena; Pospíšilová, Petra; Strouhal, Michal; Cejková, Darina; Zobaníková, Marie; Mikalová, Lenka; Sodergren, Erica; Weinstock, George M; Šmajs, David PloS one 2013 Jan;8(9):e74319
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  • Systems biology of the vervet monkey.
    Jasinska, Anna J; Schmitt, Christopher A; Service, Susan K; Cantor, Rita M; Dewar, Ken; Jentsch, James D; Kaplan, Jay R; Turner, Trudy R; Warren, Wesley C; Weinstock, George M; Woods, Roger P; Freimer, Nelson B ILAR journal / National Research Council, Institute of Laboratory Animal Resources 2013 Jan;54(2):122-43
  • Whole genome sequence of the Treponema Fribourg-Blanc: unspecified simian isolate is highly similar to the yaws subspecies.
    Zobaníková, Marie; Strouhal, Michal; Mikalová, Lenka; Cejková, Darina; Ambrožová, Lenka; Pospíšilová, Petra; Fulton, Lucinda L; Chen, Lei; Sodergren, Erica; Weinstock, George M; Smajs, David PLoS neglected tropical diseases 2013 Jan;7(4):e2172
  • Whole-genome analysis of a daptomycin-susceptible enterococcus faecium strain and its daptomycin-resistant variant arising during therapy.
    Tran, Truc T; Panesso, Diana; Gao, Hongyu; Roh, Jung H; Munita, Jose M; Reyes, Jinnethe; Diaz, Lorena; Lobos, Elizabeth A; Shamoo, Yousif; Mishra, Nagendra N; Bayer, Arnold S; Murray, Barbara E; Weinstock, George M; Arias, Cesar A Antimicrobial agents and chemotherapy 2013 Jan;57(1):261-8
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    Colvin, Joshua M; Muenzer, Jared T; Jaffe, David M; Smason, Avraham; Deych, Elena; Shannon, William D; Arens, Max Q; Buller, Richard S; Lee, Wai-Ming; Weinstock, Erica J Sodergren; Weinstock, George M; Storch, Gregory A Pediatrics 2012 Dec;130(6):e1455-62
  • Revised sequence and annotation of the Rhodobacter sphaeroides 2.4.1 genome.
    Kontur, Wayne S; Schackwitz, Wendy S; Ivanova, Natalia; Martin, Joel; Labutti, Kurt; Deshpande, Shweta; Tice, Hope N; Pennacchio, Christa; Sodergren, Erica; Weinstock, George M; Noguera, Daniel R; Donohue, Timothy J Journal of bacteriology 2012 Dec;194(24):7016-7
  • An integrated map of genetic variation from 1,092 human genomes.
    1000 Genomes Project Consortium; Abecasis, Goncalo R; Auton, Adam; Brooks, Lisa D; DePristo, Mark A; Durbin, Richard M; Handsaker, Robert E; Kang, Hyun Min; Marth, Gabor T; McVean, Gil A Nature 2012 Nov;491(7422):56-65
  • Complete genome sequence of Treponema pallidum strain DAL-1.
    Zobaníková, Marie; Mikolka, Pavol; Cejková, Darina; Pospíšilová, Petra; Chen, Lei; Strouhal, Michal; Qin, Xiang; Weinstock, George M; Smajs, David Standards in genomic sciences 2012 Oct;7(1):12-21
  • Emerging view of the human virome.
    Wylie, Kristine M; Weinstock, George M; Storch, Gregory A Translational research : the journal of laboratory and clinical medicine 2012 Oct;160(4):283-90
  • A non-human primate system for large-scale genetic studies of complex traits.
    Jasinska, Anna J; Lin, Michelle K; Service, Susan; Choi, Oi-Wa; DeYoung, Joseph; Grujic, Olivera; Kong, Sit-Yee; Jung, Yoon; Jorgensen, Mathew J; Fairbanks, Lynn A; Turner, Trudy; Cantor, Rita M; Wasserscheid, Jessica; Dewar, Ken; Warren, Wesley; Wilson, Richard K; Weinstock, George; Jentsch, J David; Freimer, Nelson B Human molecular genetics 2012 Aug;21(15):3307-16
  • A framework for human microbiome research.
    HMP consortium Nature 2012 Jun;486(7402):215-21
  • Structure, function and diversity of the healthy human microbiome.
    HMP consortium Nature 2012 Jun;486(7402):207-14
  • The 1000 Genomes Project: data management and community access.
    Clarke, Laura; Zheng-Bradley, Xiangqun; Smith, Richard; Kulesha, Eugene; Xiao, Chunlin; Toneva, Iliana; Vaughan, Brendan; Preuss, Don; Leinonen, Rasko; Shumway, Martin; Sherry, Stephen; Flicek, Paul; 1000 Genomes Project Consortium Nature methods 2012 May;9(5):459-62
  • Genetic diversity in Treponema pallidum: implications for pathogenesis, evolution and molecular diagnostics of syphilis and yaws.
    Smajs, David; Norris, Steven J; Weinstock, George M Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2012 Mar;12(2):191-202
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    Iraqi, Fuad A; Mahajne, Mustafa; Salaymah, Yasser; Sandovski, Hani; Tayem, Hanna; Vered, Karin; Balmer, Lois; Hall, Michael; Manship, Glynn; Morahan, Grant; Pettit, Ken; Scholten, Jeremy; Tweedie, Kathryn; Wallace, Andrew; Weerasekera, Lakshini; Cleak, James; Durrant, Caroline; Goodstadt, Leo; Mott, Richard; Yalcin, Binnaz; Hill, Chapel; Aylor, David L; Baric, Ralph S; Bell, Timothy A; Bendt, Katharine M; Brennan, Jennifer; Brooks, Jackie D; Buus, Ryan J; Crowley, James J; Calaway, John D; Calaway, Mark E; Cholka, Agnieszka; Darr, David B; Didion, John P; Dorman, Amy; Everett, Eric T; Ferris, Martin T; Mathes, Wendy Foulds; Fu, Chen-Ping; Gooch, Terry J; Goodson, Summer G; Gralinski, Lisa E; Hansen, Stephanie D; Heise, Mark T; Hoel, Jane; Hua, Kunjie; Kapita, Mayanga C; Lee, Seunggeun; Lenarcic, Alan B; Liu, Eric Yi; Liu, Hedi; McMillan, Leonard; Magnuson, Terry R; Manly, Kenneth F; Miller, Darla R; O'Brien, Deborah A; Odet, Fanny; Pakatci, Isa Kemal; Pan, Wenqi; de Villena, Fernando Pardo-Manuel; Perou, Charles M; Pomp, Daniel; Quackenbush, Corey R; Robinson, Nashiya N; Sharpless, Norman E; Shaw, Ginger D; Spence, Jason S; Sullivan, Patrick F; Sun, Wei; Tarantino, Lisa M; Valdar, William; Wang, Jeremy; Wang, Wei; Welsh, Catherine E; Whitmore, Alan; Wiltshire, Tim; Wright, Fred A; Xie, Yuying; Yun, Zaining; Zhabotynsky, Vasyl; Zhang, Zhaojun; Zou, Fei; Powell, Christine; Steigerwalt, Jill; Threadgill, David W; Chesler, Elissa J; Gary, A Genetics 2012 Feb;190(2):389-401
  • Bacterial communities of the coronal sulcus and distal urethra of adolescent males.
    Nelson, David E; Dong, Qunfeng; Van der Pol, Barbara; Toh, Evelyn; Fan, Baochang; Katz, Barry P; Mi, Deming; Rong, Ruichen; Weinstock, George M; Sodergren, Erica; Fortenberry, J Dennis PloS one 2012 Jan;7(5):e36298
  • Complete genome sequence of Enterococcus faecium strain TX16 and comparative genomic analysis of Enterococcus faecium genomes.
    Qin, Xiang; Galloway-Peña, Jessica R; Sillanpaa, Jouko; Roh, Jung Hyeob; Nallapareddy, Sreedhar R; Chowdhury, Shahreen; Bourgogne, Agathe; Choudhury, Tina; Muzny, Donna M; Buhay, Christian J; Ding, Yan; Dugan-Rocha, Shannon; Liu, Wen; Kovar, Christie; Sodergren, Erica; Highlander, Sarah; Petrosino, Joseph F; Worley, Kim C; Gibbs, Richard A; Weinstock, George M; Murray, Barbara E BMC microbiology 2012 Jan;12135
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    HMP consortium PloS one 2012 Jan;7(6):e39315
  • Genome analysis of a highly virulent serotype 1 strain of Streptococcus pneumoniae from West Africa.
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  • Graph accordance of next-generation sequence assemblies.
    Yao, Guohui; Ye, Liang; Gao, Hongyu; Minx, Patrick; Warren, Wesley C; Weinstock, George M Bioinformatics (Oxford, England) 2012 Jan;28(1):13-6
  • Host genes related to paneth cells and xenobiotic metabolism are associated with shifts in human ileum-associated microbial composition.
    Zhang, Tianyi; DeSimone, Robert A; Jiao, Xiangmin; Rohlf, F James; Zhu, Wei; Gong, Qing Qing; Hunt, Steven R; Dassopoulos, Themistocles; Newberry, Rodney D; Sodergren, Erica; Weinstock, George; Robertson, Charles E; Frank, Daniel N; Li, Ellen PloS one 2012 Jan;7(6):e30044
  • Hypothesis testing and power calculations for taxonomic-based human microbiome data.
    La Rosa, Patricio S; Brooks, J Paul; Deych, Elena; Boone, Edward L; Edwards, David J; Wang, Qin; Sodergren, Erica; Weinstock, George; Shannon, William D PloS one 2012 Jan;7(12):e52078
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    McElvania TeKippe, Erin; Wylie, Kristine M; Deych, Elena; Sodergren, Erica; Weinstock, George; Storch, Gregory A PloS one 2012 Jan;7(11):e50937
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  • Novel bacterial taxa in the human microbiome.
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  • Optimizing read mapping to reference genomes to determine composition and species prevalence in microbial communities.
    Martin, John; Sykes, Sean; Young, Sarah; Kota, Karthik; Sanka, Ravi; Sheth, Nihar; Orvis, Joshua; Sodergren, Erica; Wang, Zhengyuan; Weinstock, George M; Mitreva, Makedonka PloS one 2012 Jan;7(6):e36427
  • Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges.
    Monier, Adam; Welsh, Rory M; Gentemann, Chelle; Weinstock, George; Sodergren, Erica; Armbrust, E Virginia; Eisen, Jonathan A; Worden, Alexandra Z Environmental microbiology 2012 Jan;14(1):162-76
  • Sequence analysis of the human virome in febrile and afebrile children.
    Wylie, Kristine M; Mihindukulasuriya, Kathie A; Sodergren, Erica; Weinstock, George M; Storch, Gregory A PloS one 2012 Jan;7(6):e27735
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    La Rosa, Patricio S; Shands, Berkley; Deych, Elena; Zhou, Yanjiao; Sodergren, Erica; Weinstock, George; Shannon, William D PloS one 2012 Jan;7(11):e48996
  • Whole genome sequence of Treponema pallidum ssp. pallidum, strain Mexico A, suggests recombination between yaws and syphilis strains.
    Petrošová, Helena; Zobaníková, Marie; Cejková, Darina; Mikalová, Lenka; Pospíšilová, Petra; Strouhal, Michal; Chen, Lei; Qin, Xiang; Muzny, Donna M; Weinstock, George M; Šmajs, David PLoS neglected tropical diseases 2012 Jan;6(9):e1832
  • Whole genome sequences of three Treponema pallidum ssp. pertenue strains: yaws and syphilis treponemes differ in less than 0.2% of the genome sequence.
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  • Astrovirus MLB2 viremia in febrile child.
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  • High-throughput whole-genome sequencing to dissect the epidemiology of Acinetobacter baumannii isolates from a hospital outbreak.
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  • Characteristic male urine microbiomes associate with asymptomatic sexually transmitted infection.
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  • Genome analysis of Treponema pallidum subsp. pallidum and subsp. pertenue strains: most of the genetic differences are localized in six regions.
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  • Genome sequencing reveals widespread virulence gene exchange among human Neisseria species.
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Case Reports

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