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Origins of Aortic Coarctation: A Vascular Smooth Muscle Compartment Boundary Model.
Greene, Christina L; Traeger, Geoffrey; Venkatesh, Akshay; Han, David; Majesky, Mark W Journal of developmental biology 2025 Apr;13(2):
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Astrocytic TIMP-1 regulates production of Anastellin, an inhibitor of oligodendrocyte differentiation and FTY720 responses.
Sutter, Pearl A; Willis, Cory M; Menoret, Antoine; Nicaise, Alexandra M; Sacino, Anthony; Sikkema, Arend H; Jellison, Evan R; Win, Kyaw K; Han, David K; Church, William; Baron, Wia; Vella, Anthony T; Crocker, Stephen J Proceedings of the National Academy of Sciences of the United States of America 2024 Jan;121(5):e2306816121
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Extracellular vesicle fibrinogen induces encephalitogenic CD8+ T cells in a mouse model of multiple sclerosis.
Willis, Cory M; Nicaise, Alexandra M; Menoret, Antoine; Ryu, Jae Kyu; Mendiola, Andrew S; Jellison, Evan R; Givogri, Maria I; Han, David K; Bongarzone, Ernesto R; Akassoglou, Katerina; Vella, Anthony T; Crocker, Stephen J Proceedings of the National Academy of Sciences of the United States of America 2019 May;116(21):10488-10493
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Discovery of breast putative cancer antigens using an integrative platform of genomics-driven immunoproteomics.
Qendro, Veneta; Lundgren, Deborah H; Palczewski, Samuel; Hegde, Poornima; Stevenson, Christina; Perpetua, Laurie; Latifi, Ardian; Merriman, Jesse; Bugos, Grace; Han, David K Proteomics 2017 Jun;17
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Integrative proteomics, genomics, and translational immunology approaches reveal mutated forms of Proteolipid Protein 1 (PLP1) and mutant-specific immune response in multiple sclerosis.
Qendro, Veneta; Bugos, Grace A; Lundgren, Debbie H; Glynn, John; Han, May H; Han, David K Proteomics 2017 Feb;17
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Mapping the Interactome of a Major Mammalian Endoplasmic Reticulum Heat Shock Protein 90.
Hong, Feng; Mohammad Rachidi, Saleh; Lundgren, Debbie; Han, David; Huang, Xiu; Zhao, Hongyu; Kimura, Yayoi; Hirano, Hisashi; Ohara, Osamu; Udono, Heichiiro; Meng, Songdong; Liu, Bei; Li, Zihai PloS one 2017 Jan;12(1):e0169260
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A draft map of rhesus monkey tissue proteome for biomedical research.
Lee, Jin-Gyun; McKinney, Kimberly Q; Lee, Yong-Yook; Chung, Hae-Na; Pavlopoulos, Antonis J; Jung, Kook Y; Kim, Woong-Ki; Kuroda, Marcelo J; Han, David K; Hwang, Sunil PloS one 2015 Jan;10(5):e0126243
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Large-scale proteomic characterization of melanoma expressed proteins reveals nestin and vimentin as biomarkers that can potentially distinguish melanoma subtypes.
Qendro, Veneta; Lundgren, Deborah H; Rezaul, Karim; Mahony, Forrest; Ferrell, Nicholas; Bi, Andrew; Latifi, Ardian; Chowdhury, Daniyal; Gygi, Steven; Haas, Wilhelm; Wilson, Lori; Murphy, Michael; Han, David K Journal of proteome research 2014 Nov;13(11):5031-40
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Tyrosine phosphorylation of CD13 regulates inflammatory cell-cell adhesion and monocyte trafficking.
Subramani, Jaganathan; Ghosh, Mallika; Rahman, M Mamunur; Caromile, Leslie A; Gerber, Claire; Rezaul, Karim; Han, David K; Shapiro, Linda H Journal of immunology (Baltimore, Md. : 1950) 2013 Aug;191(7):3905-12
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LC-MS/MS Identification of a Bromelain Peptide Biomarker from Ananas comosus Merr.
Secor, Eric R; Szczepanek, Steven M; Singh, Anurag; Guernsey, Linda; Natarajan, Prabitha; Rezaul, Karim; Han, David K; Thrall, Roger S; Silbart, Lawrence K Evidence-based complementary and alternative medicine : eCAM 2012 Jan;2012548486
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Engagement of S1P₁-degradative mechanisms leads to vascular leak in mice.
Oo, Myat Lin; Chang, Sung-Hee; Thangada, Shobha; Wu, Ming-Tao; Rezaul, Karim; Blaho, Victoria; Hwang, Sun-Il; Han, David K; Hla, Timothy The Journal of clinical investigation 2011 Jun;121(6):2290-300
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Sphingosine interaction with acidic leucine-rich nuclear phosphoprotein-32A (ANP32A) regulates PP2A activity and cyclooxygenase (COX)-2 expression in human endothelial cells.
Habrukowich, Cheryl; Han, David K; Le, Andrew; Rezaul, Karim; Pan, Wei; Ghosh, Mallika; Li, Zaiguo; Dodge-Kafka, Kimberly; Jiang, Xuejun; Bittman, Robert; Hla, Timothy The Journal of biological chemistry 2010 Aug;285(35):26825-31
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Differential protein expression profiles in estrogen receptor-positive and -negative breast cancer tissues using label-free quantitative proteomics.
Rezaul, Karim; Thumar, Jay Kumar; Lundgren, Deborah H; Eng, Jimmy K; Claffey, Kevin P; Wilson, Lori; Han, David K Genes & cancer 2010 Mar;1(3):251-71
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Folding of Toll-like receptors by the HSP90 paralogue gp96 requires a substrate-specific cochaperone.
Liu, Bei; Yang, Yi; Qiu, Zhijuan; Staron, Matthew; Hong, Feng; Li, Yi; Wu, Shuang; Li, Yunfeng; Hao, Bing; Bona, Robert; Han, David; Li, Zihai Nature communications 2010 Jan;1(79 ):79
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Human myelin proteome and comparative analysis with mouse myelin.
Ishii, Akihiro; Dutta, Ranjan; Wark, Greg M; Hwang, Sun-Il; Han, David K; Trapp, Bruce D; Pfeiffer, Steven E; Bansal, Rashmi Proceedings of the National Academy of Sciences of the United States of America 2009 Aug;106(34):14605-10
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Pathogenic huntingtin inhibits fast axonal transport by activating JNK3 and phosphorylating kinesin.
Morfini, Gerardo A; You, Yi-Mei; Pollema, Sarah L; Kaminska, Agnieszka; Liu, Katherine; Yoshioka, Katsuji; Björkblom, Benny; Coffey, Eleanor T; Bagnato, Carolina; Han, David; Huang, Chun-Fang; Banker, Gary; Pigino, Gustavo; Brady, Scott T Nature neuroscience 2009 Jul;12(7):864-71
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Identification of novel tumor antigens with patient-derived immune-selected antibodies.
Rodriguez-Pinto, Daniel; Sparkowski, Jason; Keough, Martin P; Phoenix, Kathryn N; Vumbaca, Frank; Han, David K; Gundelfinger, Eckart D; Beesley, Philip; Claffey, Kevin P Cancer immunology, immunotherapy : CII 2009 Feb;58(2):221-34
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Large-scale quantitative phosphoproteomic analysis of T Cell Receptor Signaling: System-wide modulation of protein-protein interaction mediated by site-specific phosphorylation.
Mayya V, Lundgren DH, Hwang S-I, Rezaul K, Eng JK, Rodionov V, Han DK. Science Signaling 2009 Jan;18(2(84)):ra46
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Proteomics Analysis Reveal Unexpected Intersection of Coagulation Cascade and Immune System in Multiple Sclerosis.
Han MH, Hwang S-I, Roy DB, Lundgren DH, Fernald GH, Raine C, Robinson WH, Baranzini S, Sobel R, Han DK, Lawrence Steinman. Nature 2008 Jan;451(1076):1083
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Global survey of human T leukemic cells by integrating proteomics and transcriptomics profiling.
Wu L, Hwang S-I, Rezaul K, Lu JL, Mayya V, Gerstein M,. Lundgren DH, Han DK. Mol & Cell Proteomics 2007 Jan;6(8):1343-1353
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Overcoming the dynamic range problem in mass spectrometry-based shotgun proteomics.
Wu, Linfeng; Han, David K Expert review of proteomics 2006 Dec;3(6):611-9
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Absolute Quantification of Multi-site Phosphorylation by Selective Reaction Monitoring Mass Spectrometry: Determination of Inhibitory Phosphorylation Status of Cyclin Dependent Kinases.
Mayya V, Wu L, Rezual K, Fong M, Han DK. Mol & Cell Proteomics 2006 Jan;51146-1157
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Systematic Characterization of Nuclear Proteome from Human T Leukemia Cells: A Quantitative Proteomic Study during Apoptosis by Differential Extraction and Stable Isotope Labeling.
Hwang S-I, Lundgren DH, Mayya V, Rezaul K, Eng J, Han DK. Mol & Cell Proteomics 2006 Jan;51131-1145
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Mass spectrometry-based expression profiling of clinical prostate cancer.
Wright, Michael E; Han, David K; Aebersold, Ruedi Molecular & cellular proteomics : MCP 2005 Apr;4(4):545-54
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A Systematic Characterization of Mitochondrial Proteome from Human T Leukemia Cells.
Rezaul K, Wu L, Mayya V, Hwang S-I, and Han DK Mol & Cell Proteomics 2005 Jan;4169-181
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Systematic comparison of a two-dimensional ion trap and a three-dimensional ion trap mass spectrometer in proteomics.
Mayya, Viveka; Rezaul, Karim; Cong, Yu-Sheng; Han, David Molecular & cellular proteomics : MCP 2005 Jan;4(2):214-23
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Sphingosine 1-phosphate receptor regulation of N-cadherin mediates vascular stabilization.
Paik, Ji-Hye; Skoura, Athanasia; Chae, Sung-Suk; Cowan, Ann E; Han, David K; Proia, Richard L; Hla, Timothy Genes & development 2004 Oct;18(19):2392-403
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Proteomic mapping provides powerful insights into functional myelin biology.
Taylor, Christopher M; Marta, Cecilia B; Claycomb, Robert J; Han, David K; Rasband, Matthew N; Coetzee, Timothy; Pfeiffer, Steven E Proceedings of the National Academy of Sciences of the United States of America 2004 Mar;101(13):4643-8
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Annexin I is an endogenous ligand that mediates apoptotic cell engulfment.
Arur, Swathi; Uche, Uche E; Rezaul, Karim; Fong, Michael; Scranton, Victoria; Cowan, Ann E; Mohler, William; Han, David K Developmental cell 2003 Apr;4(4):587-98
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A novel engulfment ligand from apoptotic cells identified by quantitative proteomics
Arur S, Uche UE, Rezaul K, Fong M, Scranton V, Cowan AE, Mohler W , and Han DK Developmental Cell 2003 Jan;4(4):587-598
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Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry.
Han, D K; Eng, J; Zhou, H; Aebersold, R Nature biotechnology 2001 Oct;19(10):946-51
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Fas/FADD-mediated apoptosis triggers up-regulation of pro-inflammatory genes in vascular smooth muscle cells, followed by recruitment of macrophages in vivo.
Schaub FJ, Han DK, Liles CW, Adams LD, Coats SA, Ramachandran RK, Seifert RA, Schwartz SM, Bowen-Pope D. Nature Medicine 2000 Jan;6(7):790-796
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Astrocytic TIMP-1 regulates production of Anastellin, a novel inhibitor of oligodendrocyte differentiation and FTY720 responses
Pearl A. Sutter, Cory M. Willis, Antoine Menoret, Alexandra M. Nicaise, Anthony Sacino, Arend. H. Sikkema, Evan Jellison, Kyaw K. Win, David K. Han, William Church, Wia Baron, Anthony T. Vella, and Stephen J. Crocker bioRxiv.
