. Kshitiz, PhDAssistant Professor of Biomedical EngineeringInvestigator, Yale Center of Cancer Systems Biology Visiting Faculty, Yale University
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Degree | Institution | Major |
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BS | Indian Institute of Technology, Bombay | Computer Science |
PhD | Johns Hopkins School of Medicine | Biomedical Engineering |
Our lab’s objective is to understand a cell’s interaction with its neighbors and the microenvironment. With a particular focus on tumor microenvironment, we aim to unravel the language cells employ to converse with each other, how the grammar and the content of the langage adapt to the environment, and how cells behave in response. We use a gamut of of techniques, including live microscopy, bioinformatics, tissue engineering, nanofabrication, cell patterning, evolutionary biology, and genetics to answer fundamental questions in biology and medicine.
Our current physiological focus involves understanding how new phenotypes emerge within cancer populations by their neighborly interactions; the evolutionary basis of metastatic tolerance; as well as cardiac maturation for disease modeling.
Cancer-Stroma Interaction
When we think of cancer, we mostly think of cells constituting the neoplastic part of cancer. But a cancerous lesion consists of many other cell types, which could resist, or help in its progression. These “stromal cells” consist of activated fibroblasts, macrophages, endothelial cells, as well as the specialized environment modulated by these cells. In our lab, we attempt to systematically understand how cancer and stromal cells interact with each other using a variety of approaches, including microfluidics, nanotechnology, live cell imaging, and genetic screens. We aim to elucidate the mechanisms through which stroma facilitates cancer to grow, become invasive, and resistant to chemotherapeutic drugs.
Hypoxia and Metabolism
Tumors are frequently hypoxic, and glycolytic. Their metabolic pathways are rerouted to help tumor cells continue to divide rapidly under lack of oxygen, and unavailability of certain nutrients. We study how lactate, a byproduct of anaerobic glycolysis, and accompanied acidosis in the microenvironment influences cancer phenotypes. We have found that lactate can increase ROS production in the cells, and increase autophagy. Using in vitro and in silico models of cancer combined with live cell microscop, we aim to explore the role of lactate in regulating cancer growth and metastasis.
Systems Cell Biology
Mammals exhibit different rates of metastasis, which interestingly correlates with the subtype of placentation during pregnancy. Based on these, and many other evidence, we are advancing a new paradigm of cancer metastasis called: Evolved Levels of Invasability (ELI) suggesting that stromal resistance (or assistance) to cancer invasion is evolutionarily derived.
This paradigm presents a roadmap to observe the stromal compartment in cancer as a crucial player in regulating cancer phenotypes, as well as providing new avenues to understand and target cancer dissemination and metastasis.
Mechanobiology and Cardiac Maturation
Cells, like all of us, live in a matrix. And the nature of the matrix could determine important functions of the cells, including their shape, migration speeds, fate, proliferative state, as well as metabolism. We focus on understanding how matrix rigidity and topography regulates cell signaling, and metabolism, as well as utilize mechanobiology for cardiac maturation.
In our lab, we use a variety of tools to both elucidate the signaling machinery involved in mechanotransduction, as well as utilize the gained knowledge for specific therapeutic purposes by bioengineering. A dedicated effort in our lab focuses on creating mature, adult-like cardiac tissues from human pluripotent cell sources as a surrogate for drug screening.
Journal Articles
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Scar matrix drives Piezo1 mediated stromal inflammation leading to placenta accreta spectrum.
Nature communications 2024 Sep;15(1):8379
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Oscillatory hypoxia induced gene expression predicts low survival in human breast cancer patients.
Molecular carcinogenesis 2024 Aug;
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Lightsheet microscopy integrates single-cell optical visco-elastography and fluorescence cytometry of 3D live tissues.
bioRxiv : the preprint server for biology 2024 May;
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Lactate in breast cancer cells is associated with evasion of hypoxia-induced cell cycle arrest and adverse patient outcome.
Human cell 2024 Mar;
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Oscillatory Hypoxia Can Induce Senescence of Adipose-Derived Mesenchymal Stromal Cells Potentiating Invasive Transformation of Breast Epithelial Cells.
Cancers 2024 Feb;16(5):
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Tissue-of-origin for cancers determines HIF-1 activation induced phenotypic heterogeneity.
Molecular carcinogenesis 2024 Feb;
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Metabolic Acidosis Results in Sexually Dimorphic Response in the Heart Tissue.
Metabolites 2023 Apr;13(4):
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Lactate-dependent chaperone-mediated autophagy induces oscillatory HIF-1α activity promoting proliferation of hypoxic cells.
Cell systems 2022 Dec;13(12):1048-1064.e7
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Recombinant Human Proteoglycan 4 (rhPRG4) Downregulates TNFα-Stimulated NFκB Activity and FAT10 Expression in Human Corneal Epithelial Cells.
International journal of molecular sciences 2022 Oct;23(21):
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Cardiac ultrastructure inspired matrix induces advanced metabolic and functional maturation of differentiated human cardiomyocytes.
Cell reports 2022 Jul;40(4):111146
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Tracing the cis-regulatory changes underlying the endometrial control of placental invasion.
Proceedings of the National Academy of Sciences of the United States of America 2022 Feb;119(6):
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Evolved Resistance to Placental Invasion Secondarily Confers Increased Survival in Melanoma Patients.
Journal of clinical medicine 2021 Feb;10(4):
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Incorporating and addressing testing bias within estimates of epidemic dynamics for SARS-CoV-2.
BMC medical research methodology 2021 Jan;21(1):11
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Machine Learning for the Diagnosis of Orthodontic Extractions: A Computational Analysis Using Ensemble Learning.
Bioengineering (Basel, Switzerland) 2020 Jun;7(2):
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Evolution of placental invasion and cancer metastasis are causally linked.
Nature ecology & evolution 2019 Dec;3(12):1743-1753
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Dynamic secretome of bone marrow-derived stromal cells reveals a cardioprotective biochemical cocktail.
Proceedings of the National Academy of Sciences of the United States of America 2019 Jul;116(28):14374-14383
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Control of the interface between heterotypic cell populations reveals the mechanism of intercellular transfer of signaling proteins.
Integrative biology : quantitative biosciences from nano to macro 2015 Mar;7(3):364-72
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Cyclin-dependent kinases regulate lysosomal degradation of hypoxia-inducible factor 1α to promote cell-cycle progression.
Proceedings of the National Academy of Sciences of the United States of America 2014 Aug;111(32):E3325-34
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Spatial control of adult stem cell fate using nanotopographic cues.
Biomaterials 2014 Mar;35(8):2401-2410
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Modeling intercellular transfer of biomolecules through tunneling nanotubes.
Bulletin of mathematical biology 2013 Aug;75(8):1400-16
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Sirtuin-7 inhibits the activity of hypoxia-inducible factors.
The Journal of biological chemistry 2013 Jul;288(29):20768-75
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A nontranscriptional role for HIF-1α as a direct inhibitor of DNA replication.
Science signaling 2013 Feb;6(262):ra10
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Cell motility of neural stem cells is reduced after SPIO-labeling, which is mitigated after exocytosis.
Magnetic resonance in medicine 2013 Jan;69(1):255-62
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Hypoxia-inducible factor-dependent breast cancer-mesenchymal stem cell bidirectional signaling promotes metastasis.
The Journal of clinical investigation 2013 Jan;123(1):189-205
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Control of stem cell fate and function by engineering physical microenvironments.
Integrative biology : quantitative biosciences from nano to macro 2012 Sep;4(9):1008-18
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Nanopatterned cardiac cell patches promote stem cell niche formation and myocardial regeneration.
Integrative biology : quantitative biosciences from nano to macro 2012 Sep;4(9):1019-33
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Matrix rigidity controls endothelial differentiation and morphogenesis of cardiac precursors.
Science signaling 2012 Jun;5(227):ra41
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A method for probabilistic mapping between protein structure and function taxonomies through cross training.
BMC structural biology 2008 Oct;840
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Detailed protein sequence alignment based on Spectral Similarity Score (SSS).
BMC bioinformatics 2005 Apr;6105
Letters
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CRISPRing the hypertrophic cardiomyopathy: correcting one pathogenic variant at a time.
Signal transduction and targeted therapy 2023 Jun;8(1):254
Reviews
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Mechanotransduction via p190RhoGAP regulates a switch between cardiomyogenic and endothelial lineages in adult cardiac progenitors.
Stem cells (Dayton, Ohio) 2014 Aug;32(8):1999-2007
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Micro- and nanoengineering for stem cell biology: the promise with a caution.
Trends in biotechnology 2011 Aug;29(8):399-408