Yanjiao Zhou, MD, PhDAssociate Professor of Medicine
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Degree | Institution | Major |
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MD | Zhangjiakou Medical College | Medicine |
MS | Tianjin Medical University | Immunology |
PhD | Tianjin Medical University | Microbiology |
Post-Graduate Training
Training | Institution | Specialty |
---|---|---|
Postdoctoral | The Rockefeller University | Immunology |
Postdoctoral | The Genome Institute of Washington University School of Medicine | Microbiome and Bioinformatics |
Awards
Name of Award/Honor | Awarding Organization |
---|---|
Award for Institute of Clinical and Translational Sciences | Washington University School of Medicine |
3rd class scholarship for honored student. | Zhangjiakou Medical College |
1st Place Scholarship for Honored Student | Zhangjiakou Medical School |
3rd class scholarship for honored student. | Zhangjiakou Medical College |
Dr. Zhou is a computational biologist. She was one of the lead analysts in the first and second phase of Human Microbiome Project. She has been involved in over 30 microbiome-related projects that study the role of microbiome in health and disease.
The major research interest of her laboratory is to develop microbiome-based diagnostics and therapeutics for multiple sclerosis as well as other diseases, with a focus on how nutrition and microbial metabolites influence the gut-brain axis. By taking a multidisciplinary approach that includes bioinformatics and molecular biology, we are researching the following areas:
(1) Determine how intermittent fasting affects the gut microbiome and MS pathogenesis in mouse models and patients in collaboration with Washington University School of Medicine. We also work on different strategies to identify microbes, microbial genes and metabolites that modulate peripheral inflammation and neuroinflammation, which potentially permits the development of probiotic-based therapeutics for MS.
(2) Study nutritional induced alteration of the lung and gut microbiome and its influence on airway inflammation. We are testing how Boswellia, an herbal extract with anti-inflammatory properties ameliorate asthma through reconfiguration of the gut and lung microbiome.
(3) Develop a novel host-microbiome ontology resource. We are building a clustered and integrated host-microbiome interaction database that allows for effective microbial information retrieval and data modeling.
Postdoctoral Fellow position in microbiome and alcohol research
Summary:
A position is available to conduct studies and receive training in alcohol research with a focus on the gut-brain axis and the gut microbiome. This collaborative effort involving the UConn Alcohol Research Center, the Laboratory of Microbiome Science in Department of Medicine, and Jackson Laboratory will investigate the role of the gut microbiome in excessive alcohol consumption in mice and humans, and its contribution to varying treatment response. The research will integrate multi-OMICS, experimental and clinical approaches.
The position is supported by the NRSA-funded T32 Institutional Research Training Program at UConn Health. It offers the NRSA stipend, health insurance, and funds for conferences and mini-courses. The fellow will have the opportunity to be trained on next generation sequencing technology, bioinformatics, microbiome, animal behavior biology and clinical trials. He/she will also attend seminars in alcohol research offered by the Program.
Basic requirements:
- Less than 1 yr since Ph.D in Psychology, Microbiology or Molecular Biology or related disciplines
- Interest in an alcohol research career
- US citizen or permanent resident
Other requirements:
- Knowledge and familiarity of approaches in either microbiome/microbiology or alcohol research
- Have a good publication record
- Ability to design experiments and effectively perform experiments and trouble shooting
- Good written and verbal communication skills
- Ability to effectively interact with researchers from a diverse research background
Special instructions to applicants:
Interested persons should submit a cover letter, curriculum vitae, and a list of 3 references to Dr. Yanjiao Zhou: yazhou@uchc.edu.
UConn Health is an affirmative action employer in addition to an EEO and M/F/V/PwD employer.
Accepting Lab Rotation Students: Fall Block 2024, Spring 1 and 2 Block 2025
Journal Articles
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Randomised controlled trial of intermittent calorie restriction in people with multiple sclerosis.
Journal of neurology, neurosurgery, and psychiatry 2024 Aug;
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Meta-analysis identifies common gut microbiota associated with multiple sclerosis.
Genome medicine 2024 Jul;16(1):94
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Blackcurrants shape gut microbiota profile and reduce risk of postmenopausal osteoporosis via the gut-bone axis: Evidence from a pilot randomized controlled trial.
The Journal of nutritional biochemistry 2024 Jul;133109701
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High-fat diet during early life reshapes the gut microbiome and is associated with the disrupted mammary microenvironment in later life in mice.
Nutrition research (New York, N.Y.) 2024 Jul;1271-12
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Short-chain fatty acid valerate reduces voluntary alcohol intake in male mice.
Microbiome 2024 Jun;12(1):108
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Longitudinal profiling of the microbiome at four body sites reveals core stability and individualized dynamics during health and disease.
Cell host & microbe 2024 Mar;
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Azithromycin therapy in infants hospitalized for RSV bronchiolitis: airway MMP-9 levels and subsequent recurrent wheeze.
Annals of allergy, asthma & immunology : official publication of the American College of Allergy, Asthma, & Immunology 2024 Jan;
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Baseline Gut Microbiome Signatures Correlate with Immunogenicity of SARS-CoV-2 mRNA Vaccines.
International journal of molecular sciences 2023 Jul;24(14):
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A metabolome-wide Mendelian randomization study prioritizes potential causal circulating metabolites for multiple sclerosis.
Journal of neuroimmunology 2023 Jun;379578105
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The microbial community dynamics of cocaine sensitization in two behaviorally divergent strains of collaborative cross mice.
Genes, brain, and behavior 2023 Jun;22(3):e12845
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Whole-Genome Sequencing of Lactobacillus johnsonii MT4, a Novel Strain Isolated from the Oral Cavity of C57BL/6 Mice.
Microbiology resource announcements 2023 May;12(5):e0008923
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High-resolution microbiome analysis reveals exclusionary Klebsiella species competition in preterm infants at risk for necrotizing enterocolitis.
Scientific reports 2023 May;13(1):7893
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The Fungal Microbiome of the Upper Airway Is Associated With Future Loss of Asthma Control and Exacerbation Among Children With Asthma.
Chest 2023 Mar;
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Microbial glutamate metabolism predicts intravenous cocaine self-administration in diversity outbred mice.
Neuropharmacology 2023 Mar;226109409
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Bone loss is ameliorated by fecal microbiota transplantation through SCFA/GPR41/ IGF1 pathway in sickle cell disease mice.
Scientific reports 2022 Nov;12(1):20638
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Exploratory studies of oral and fecal microbiome in healthy human aging.
Frontiers in aging 2022 Oct;31002405
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Subgenomic RNA profiling suggests novel mechanism in coronavirus gene regulation and host adaption.
Life science alliance 2022 Aug;5(8):
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Dietary Boswellia serrata Acid Alters the Gut Microbiome and Blood Metabolites in Experimental Models.
Nutrients 2022 Feb;14(4):
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Effects of dietary restriction on gut microbiota and CNS autoimmunity.
Clinical Immunology 2022 Feb;235108575
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Alterations of host-gut microbiome interactions in multiple sclerosis.
EBioMedicine 2022 Jan;76103798
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Bacterial Indole as a Multifunctional Regulator of Klebsiella oxytoca Complex Enterotoxicity.
mBio 2022 Jan;e0375221
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Targeting p21Cip1 highly expressing cells in adipose tissue alleviates insulin resistance in obesity.
Cell Metabolism. 2021 Nov;
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The hepatocyte growth factor/c-met pathway is a key determinant of the fibrotic kidney local microenvironment.
iScience 2021 Oct;24(10):103112
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Alterations in subgingival microbiota during full-fixed appliance orthodontic treatment-A prospective study.
Orthodontics & craniofacial research 2021 Sep;
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Mucosal Bacteria Modulate Candida albicans Virulence in Oropharyngeal Candidiasis.
mBio 2021 Aug;12(4):e0193721
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Alterations of the gut mycobiome in patients with MS.
EBioMedicine 2021 Aug;71103557
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Investigating the origin of the fetal gut and placenta microbiome in twins.
The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians 2021 Jun;1-11
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The azithromycin to prevent wheezing following severe RSV bronchiolitis-II clinical trial: Rationale, study design, methods, and characteristics of study population.
Contemporary clinical trials communications 2021 Jun;22100798
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Alteration of the fecal microbiota in Chinese patients with Schistosoma japonicum infection.
Parasite (Paris, France) 2021 Jan;281
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The Gut Microbiome and the Big Eight.
Nutrients 2020 Dec;12(12):
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Cytotoxin-producing Klebsiella oxytoca in the preterm gut and its association with necrotizing enterocolitis.
Emerging microbes & infections 2020 Dec;9(1):1321-1329
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Ethnic variation of oral microbiota in children.
Scientific reports 2020 Sep;10(1):14788
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Longitudinal Analysis of Serum Cytokine Levels and Gut Microbial Abundance Links IL-17/IL-22 with Clostridia and Insulin Sensitivity in Humans.
Diabetes 2020 May;
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The upper-airway microbiota and loss of asthma control among asthmatic children.
Nature communications 2019 Dec;10(1):5714
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A longitudinal big data approach for precision health.
Nature medicine 2019 May;25(5):792-804
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Longitudinal multi-omics of host-microbe dynamics in prediabetes.
Nature 2019 May;569(7758):663-671
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Diet during Pregnancy and Infancy and the Infant Intestinal Microbiome.
The Journal of pediatrics 2018 Aug;20347-54.e4
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Intermittent Fasting Confers Protection in CNS Autoimmunity by Altering the Gut Microbiota.
Cell metabolism 2018 Jun;27(6):1222-1235.e6 *Co-Corresponding Authors
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Differential human gut microbiome assemblages during soil-transmitted helminth infections in Indonesia and Liberia.
Microbiome 2018 Feb;6(1):33
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Early pregnancy vaginal microbiome trends and preterm birth.
American journal of obstetrics and gynecology 2017 Sep;217(3):356.e1-356.e18 *Co-First Authors
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Rapid replacement by non-vaccine pneumococcal serotypes may mitigate the impact of the pneumococcal conjugate vaccine on nasopharyngeal bacterial ecology.
Scientific reports 2017 Aug;7(1):8127
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A prospective microbiome-wide association study of food sensitization and food allergy in early childhood.
Allergy 2017 Jun;73145-152
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Factors Influencing the Infant Gut Microbiome at Age 3-6 months: Findings from the ethnically diverse Vitamin D Antenatal Asthma Reduction Trial (VDAART).
The Journal of allergy and clinical immunology 2016 Oct;139482-491.e14
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Azithromycin therapy during respiratory syncytial virus bronchiolitis: Upper airway microbiome alterations and subsequent recurrent wheeze.
The Journal of allergy and clinical immunology 2016 Oct;138(4):1215-1219.e5
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Characterization of the bacterial and fungal microbiome in indoor dust and outdoor air samples: a pilot study.
Environmental science. Processes & impacts 2016 May;18713-24
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Gut bacteria dysbiosis and necrotising enterocolitis in very low birthweight infants: a prospective case-control study.
Lancet (London, England) 2016 May;387(10031):1928-36
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Metagenomic Approach for Identification of the Pathogens Associated with Diarrhea in Stool Specimens.
Journal of clinical microbiology 2016 Feb;54(2):368-75
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Early life dynamics of the human gut virome and bacterial microbiome in infants.
Nature medicine 2015 Oct;21(10):1228-34
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Longitudinal analysis of the premature infant intestinal microbiome prior to necrotizing enterocolitis: a case-control study.
PloS one 2015 Jan;10(3):e0118632
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Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment.
Nature communications 2015 Jan;67486
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Small bowel resection induces long-term changes in the enteric microbiota of mice.
Journal of gastrointestinal surgery : official journal of the Society for Surgery of the Alimentary Tract 2015 Jan;19(1):56-64; discussion 64
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HCoDES reveals chromosomal DNA end structures with single-nucleotide resolution.
Molecular cell 2014 Dec;56(6):808-18
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Phenotypic and genotypic analysis of Clostridium difficile isolates: a single-center study.
Journal of clinical microbiology 2014 Dec;52(12):4260-6
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Patterned progression of bacterial populations in the premature infant gut.
Proceedings of the National Academy of Sciences of the United States of America 2014 Aug;111(34):12522-7
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Sepsis from the gut: the enteric habitat of bacteria that cause late-onset neonatal bloodstream infections.
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2014 May;58(9):1211-8
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Exploration of bacterial community classes in major human habitats.
Genome biology 2014 Jan;15(5):R66
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Metagenomic analysis of double-stranded DNA viruses in healthy adults.
BMC biology 2014 Jan;1271
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The conjunctival microbiome in health and trachomatous disease: a case control study.
Genome medicine 2014 Jan;6(11):99
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Quantitation and composition of cutaneous microbiota in diabetic and nondiabetic men.
The Journal of infectious diseases 2013 Apr;207(7):1105-14
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Genome-wide control of RNA polymerase II activity by cohesin.
PLoS genetics 2013 Mar;9(3):e1003382
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Solubility-based genetic screen identifies RING finger protein 126 as an E3 ligase for activation-induced cytidine deaminase.
Proceedings of the National Academy of Sciences of the United States of America 2013 Jan;110(3):1029-34
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Biogeography of the ecosystems of the healthy human body.
Genome biology 2013 Jan;14(1):R1
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A framework for human microbiome research.
Nature 2012 Jun;486(7402):215-21
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Structure, function and diversity of the healthy human microbiome.
Nature 2012 Jun;486(7402):207-14
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A core human microbiome as viewed through 16S rRNA sequence clusters.
PloS one 2012 Jan;7(6):e34242
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Evaluation of 16S rDNA-based community profiling for human microbiome research.
PloS one 2012 Jan;7(6):e39315
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Novel bacterial taxa in the human microbiome.
PloS one 2012 Jan;7(6):e35294
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Statistical object data analysis of taxonomic trees from human microbiome data.
PloS one 2012 Jan;7(11):e48996
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Enteric defensins are essential regulators of intestinal microbial ecology.
Nature immunology 2010 Jan;11(1):76-83
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The decapeptide CMS001 enhances swimming endurance in mice.
Peptides 2008 Jul;29(7):1176-82
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Penicillin-binding proteins and cell wall composition in beta-lactam-sensitive and -resistant strains of Staphylococcus sciuri.
Journal of bacteriology 2008 Jan;190(2):508-14
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Tracking the in vivo evolution of multidrug resistance in Staphylococcus aureus by whole-genome sequencing.
Proceedings of the National Academy of Sciences of the United States of America 2007 May;104(22):9451-6
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Dietary Indian frankincense (Boswellia serrata) ameliorates murine allergic asthma through modulation of the gut microbiome
Journal of Functional Foods
Book Chapters
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Acquisition of the Human Gut Microbiota
WGO Handbook on Gut Microbes. 2014 May;18-22
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Hypothesis testing of metagenomic data
Metagenomics for Microbiology 2014 Jan;
Case Reports
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Transferable vancomycin resistance in a community-associated MRSA lineage.
The New England journal of medicine 2014 Apr;370(16):1524-31
Reviews
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Targeting the gut to treat multiple sclerosis.
The Journal of clinical investigation 2021 Jul;131(13):
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The Emerging Role of the Gut Microbiome in Adult Patients With Multiple Sclerosis.
The Journal of neuroscience nursing : journal of the American Association of Neuroscience Nurses 2016 Dec;48(6):358-364